Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | EL084_RS00180 | Genome accession | NZ_LR134292 |
| Coordinates | 28207..29163 (+) | Length | 318 a.a. |
| NCBI ID | WP_115254812.1 | Uniprot ID | - |
| Organism | Streptococcus equinus strain NCTC10389 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 23207..34163
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL084_RS00140 (NCTC10389_00031) | - | 24101..24469 (+) | 369 | WP_126439865.1 | DUF1033 family protein | - |
| EL084_RS00145 (NCTC10389_00032) | comYA | 24538..25479 (+) | 942 | WP_126439866.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| EL084_RS00150 (NCTC10389_00033) | comYB | 25403..26446 (+) | 1044 | WP_164557721.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| EL084_RS00155 (NCTC10389_00034) | comYC | 26446..26748 (+) | 303 | WP_003067906.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| EL084_RS00160 (NCTC10389_00035) | comGD | 26723..27163 (+) | 441 | WP_003067905.1 | competence type IV pilus minor pilin ComGD | - |
| EL084_RS00165 (NCTC10389_00036) | comGE | 27117..27410 (+) | 294 | WP_003067904.1 | competence type IV pilus minor pilin ComGE | - |
| EL084_RS00170 (NCTC10389_00037) | comYF | 27394..27831 (+) | 438 | WP_003067903.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| EL084_RS00175 (NCTC10389_00038) | comGG | 27842..28153 (+) | 312 | WP_268921724.1 | competence type IV pilus minor pilin ComGG | - |
| EL084_RS00180 (NCTC10389_00039) | comYH | 28207..29163 (+) | 957 | WP_115254812.1 | class I SAM-dependent methyltransferase | Machinery gene |
| EL084_RS00185 (NCTC10389_00040) | - | 29217..30416 (+) | 1200 | WP_126439867.1 | acetate kinase | - |
| EL084_RS00190 (NCTC10389_00041) | - | 30574..30771 (+) | 198 | WP_126439868.1 | helix-turn-helix transcriptional regulator | - |
| EL084_RS00200 (NCTC10389_00042) | - | 31290..31925 (+) | 636 | WP_126439869.1 | CPBP family intramembrane glutamic endopeptidase | - |
| EL084_RS00205 (NCTC10389_00043) | proC | 31976..32746 (-) | 771 | WP_126439870.1 | pyrroline-5-carboxylate reductase | - |
| EL084_RS00210 (NCTC10389_00044) | pepA | 32807..33874 (-) | 1068 | WP_044023484.1 | glutamyl aminopeptidase | - |
Sequence
Protein
Download Length: 318 a.a. Molecular weight: 35746.81 Da Isoelectric Point: 4.4305
>NTDB_id=1120416 EL084_RS00180 WP_115254812.1 28207..29163(+) (comYH) [Streptococcus equinus strain NCTC10389]
MNFENIETAYGLILENIQLIENELKTHIYDALIEQNSFYLGAEGASEAVAANNEKLRQLNLTKEEWRCTFQFIFIKAAQT
EALQANHQFTPDAIGFILMFLIENLTASKELDVLEIGSGTGNLAQTLLNNSSKDLNYLGIEVDDLLIDLSASIAEVMDSK
AQFVQEDAVRPQILKESDVIISDLPVGFYPNDEIAKRYKVASSEGHTYAHHLLMEQSLKYLKKDGIAVFLAPVSLLTSKQ
SDLLKAWLKDYADVIAVITLPESIFGNAANAKSIFVLKKQAEHTPETFVYPLADLQSREVLTDFIDKFKKWNIENMIF
MNFENIETAYGLILENIQLIENELKTHIYDALIEQNSFYLGAEGASEAVAANNEKLRQLNLTKEEWRCTFQFIFIKAAQT
EALQANHQFTPDAIGFILMFLIENLTASKELDVLEIGSGTGNLAQTLLNNSSKDLNYLGIEVDDLLIDLSASIAEVMDSK
AQFVQEDAVRPQILKESDVIISDLPVGFYPNDEIAKRYKVASSEGHTYAHHLLMEQSLKYLKKDGIAVFLAPVSLLTSKQ
SDLLKAWLKDYADVIAVITLPESIFGNAANAKSIFVLKKQAEHTPETFVYPLADLQSREVLTDFIDKFKKWNIENMIF
Nucleotide
Download Length: 957 bp
>NTDB_id=1120416 EL084_RS00180 WP_115254812.1 28207..29163(+) (comYH) [Streptococcus equinus strain NCTC10389]
ATGAATTTTGAAAATATCGAAACAGCCTATGGGTTGATTCTTGAAAATATACAATTAATCGAAAATGAGTTGAAAACACA
CATTTACGATGCACTTATTGAACAAAACTCTTTTTATCTTGGTGCTGAGGGTGCCAGTGAAGCTGTAGCTGCAAATAATG
AGAAACTACGCCAACTTAACTTAACTAAGGAAGAATGGCGCTGTACTTTTCAGTTTATCTTTATTAAAGCTGCGCAAACA
GAAGCTCTTCAGGCAAATCACCAATTTACACCTGATGCTATTGGCTTCATTTTAATGTTCCTCATTGAGAATTTGACAGC
TTCTAAGGAACTTGATGTTTTGGAAATTGGTAGCGGAACAGGTAACCTTGCCCAAACGTTGTTGAACAACTCATCTAAAG
ATCTAAACTATCTAGGTATTGAAGTTGATGATTTGTTGATTGACTTGTCAGCAAGTATCGCTGAAGTTATGGATTCTAAA
GCTCAATTCGTTCAAGAAGATGCTGTACGCCCACAGATTCTTAAGGAAAGTGATGTCATCATCAGTGACCTTCCAGTCGG
ATTCTATCCAAATGATGAAATTGCAAAACGTTACAAAGTAGCCAGTAGTGAAGGGCACACTTATGCGCATCATTTGTTGA
TGGAACAATCTCTTAAATATCTCAAAAAAGACGGGATTGCTGTCTTTTTAGCACCAGTTAGTCTTTTGACAAGTAAGCAA
AGTGACCTGTTGAAAGCATGGTTGAAGGATTATGCTGATGTGATTGCTGTGATTACTTTGCCAGAATCTATCTTTGGAAA
TGCAGCCAATGCGAAATCAATTTTCGTTTTGAAAAAACAAGCTGAACATACTCCAGAAACCTTTGTTTATCCACTTGCTG
ACTTGCAAAGTCGAGAAGTGTTGACAGACTTCATTGATAAATTTAAAAAATGGAATATTGAAAATATGATTTTTTAA
ATGAATTTTGAAAATATCGAAACAGCCTATGGGTTGATTCTTGAAAATATACAATTAATCGAAAATGAGTTGAAAACACA
CATTTACGATGCACTTATTGAACAAAACTCTTTTTATCTTGGTGCTGAGGGTGCCAGTGAAGCTGTAGCTGCAAATAATG
AGAAACTACGCCAACTTAACTTAACTAAGGAAGAATGGCGCTGTACTTTTCAGTTTATCTTTATTAAAGCTGCGCAAACA
GAAGCTCTTCAGGCAAATCACCAATTTACACCTGATGCTATTGGCTTCATTTTAATGTTCCTCATTGAGAATTTGACAGC
TTCTAAGGAACTTGATGTTTTGGAAATTGGTAGCGGAACAGGTAACCTTGCCCAAACGTTGTTGAACAACTCATCTAAAG
ATCTAAACTATCTAGGTATTGAAGTTGATGATTTGTTGATTGACTTGTCAGCAAGTATCGCTGAAGTTATGGATTCTAAA
GCTCAATTCGTTCAAGAAGATGCTGTACGCCCACAGATTCTTAAGGAAAGTGATGTCATCATCAGTGACCTTCCAGTCGG
ATTCTATCCAAATGATGAAATTGCAAAACGTTACAAAGTAGCCAGTAGTGAAGGGCACACTTATGCGCATCATTTGTTGA
TGGAACAATCTCTTAAATATCTCAAAAAAGACGGGATTGCTGTCTTTTTAGCACCAGTTAGTCTTTTGACAAGTAAGCAA
AGTGACCTGTTGAAAGCATGGTTGAAGGATTATGCTGATGTGATTGCTGTGATTACTTTGCCAGAATCTATCTTTGGAAA
TGCAGCCAATGCGAAATCAATTTTCGTTTTGAAAAAACAAGCTGAACATACTCCAGAAACCTTTGTTTATCCACTTGCTG
ACTTGCAAAGTCGAGAAGTGTTGACAGACTTCATTGATAAATTTAAAAAATGGAATATTGAAAATATGATTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
68.671 |
99.371 |
0.682 |
| comYH | Streptococcus mutans UA159 |
68.354 |
99.371 |
0.679 |