Detailed information NTG1120162

Bioinformatically predicted

Overview

• Name: comYC
• Type: Machinery gene
• Locus tag: EL100_RS02690
• Genome accession: NZ_LR134285
• Coordinates: 523903..524220 (-)
• Length: 105 a.a.
• NCBI ID: WP_023022076.1
• Uniprot ID: -
• Organism: Streptococcus australis strain NCTC3168
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 518903..529220

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL100_RS02655 (NCTC3168_00548)	-	519345..520019 (-)	675	WP_224781595.1	CPBP family intramembrane glutamic endopeptidase	-
EL100_RS02660 (NCTC3168_00549)	-	520172..521368 (-)	1197	WP_126403669.1	acetate kinase	-
EL100_RS02665 (NCTC3168_00550)	comYH	521417..522370 (-)	954	WP_126403668.1	class I SAM-dependent methyltransferase	Machinery gene
EL100_RS02670 (NCTC3168_00551)	comGG	522402..522848 (-)	447	WP_126403667.1	competence type IV pilus minor pilin ComGG	-
EL100_RS02675 (NCTC3168_00552)	comGF/cglF	522814..523266 (-)	453	WP_048717662.1	competence type IV pilus minor pilin ComGF	Machinery gene
EL100_RS02680 (NCTC3168_00553)	comGE	523250..523543 (-)	294	WP_006595134.1	competence type IV pilus minor pilin ComGE	-
EL100_RS02685	comGD/cglD	523509..523934 (-)	426	WP_042507426.1	competence type IV pilus minor pilin ComGD	Machinery gene
EL100_RS02690 (NCTC3168_00555)	comYC	523903..524220 (-)	318	WP_023022076.1	competence type IV pilus major pilin ComGC	Machinery gene
EL100_RS02695 (NCTC3168_00556)	comYB	524217..525239 (-)	1023	WP_126403665.1	competence type IV pilus assembly protein ComGB	Machinery gene
EL100_RS02700 (NCTC3168_00557)	comYA	525181..526122 (-)	942	WP_126403664.1	competence type IV pilus ATPase ComGA	Machinery gene
EL100_RS02705 (NCTC3168_00558)	-	526229..526606 (-)	378	WP_048717460.1	DUF1033 family protein	-
EL100_RS02710 (NCTC3168_00559)	-	526814..527917 (-)	1104	WP_126403663.1	glycosyl hydrolase family 8	-

Sequence

Protein

• Length: 105 a.a.
• Molecular weight: 11703.65 Da
• Isoelectric Point: 9.8248

>NTDB_id=1120162 EL100_RS02690 WP_023022076.1 523903..524220(-) (comYC) [Streptococcus australis strain NCTC3168]
MKSLRTLKVKAFTLIEMLVVLLIISVLLLLFVPNLTKQKDSVTDTGNRAVVKVVESQAELYELNHQNEKASLSKLVAEGQ
ITQKQAEAYRAHYVKNAGDHRAVAD

Nucleotide

• Length: 318 bp

>NTDB_id=1120162 EL100_RS02690 WP_023022076.1 523903..524220(-) (comYC) [Streptococcus australis strain NCTC3168]
ATGAAATCATTGCGCACACTCAAGGTAAAAGCTTTTACTCTGATTGAAATGTTAGTTGTTTTGCTCATTATCAGCGTTCT
TCTCTTGCTCTTTGTTCCGAACTTGACCAAGCAGAAAGATTCGGTAACAGATACAGGAAATCGAGCAGTCGTCAAAGTCG
TGGAGAGCCAGGCTGAGCTCTATGAACTCAATCATCAGAATGAAAAAGCTAGTCTTTCTAAGCTAGTCGCAGAAGGACAA
ATCACTCAAAAACAAGCAGAAGCCTACCGTGCTCACTATGTGAAGAATGCAGGTGATCACCGTGCGGTTGCAGATTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (8-30)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGC/cglC	Streptococcus mitis SK321	69.524	100	0.695
comYC	Streptococcus gordonii str. Challis substr. CH1	69.524	100	0.695
comYC	Streptococcus mutans UA140	67.619	100	0.676
comYC	Streptococcus mutans UA159	67.619	100	0.676
comGC/cglC	Streptococcus pneumoniae TIGR4	66.667	100	0.667
comGC/cglC	Streptococcus pneumoniae D39	66.667	100	0.667
comGC/cglC	Streptococcus pneumoniae Rx1	66.667	100	0.667
comGC/cglC	Streptococcus mitis NCTC 12261	66.667	100	0.667
comGC/cglC	Streptococcus pneumoniae R6	66.667	100	0.667
comGC	Lactococcus lactis subsp. cremoris KW2	61.224	93.333	0.571
comYC	Streptococcus suis isolate S10	64.045	84.762	0.543
comGC	Staphylococcus aureus MW2	51.282	74.286	0.381
comGC	Staphylococcus aureus N315	51.282	74.286	0.381