Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD/cglD   Type   Machinery gene
Locus tag   EL100_RS02685 Genome accession   NZ_LR134285
Coordinates   523509..523934 (-) Length   141 a.a.
NCBI ID   WP_042507426.1    Uniprot ID   -
Organism   Streptococcus australis strain NCTC3168     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 518509..528934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL100_RS02655 (NCTC3168_00548) - 519345..520019 (-) 675 WP_224781595.1 CPBP family intramembrane glutamic endopeptidase -
  EL100_RS02660 (NCTC3168_00549) - 520172..521368 (-) 1197 WP_126403669.1 acetate kinase -
  EL100_RS02665 (NCTC3168_00550) comYH 521417..522370 (-) 954 WP_126403668.1 class I SAM-dependent methyltransferase Machinery gene
  EL100_RS02670 (NCTC3168_00551) comGG 522402..522848 (-) 447 WP_126403667.1 competence type IV pilus minor pilin ComGG -
  EL100_RS02675 (NCTC3168_00552) comGF/cglF 522814..523266 (-) 453 WP_048717662.1 competence type IV pilus minor pilin ComGF Machinery gene
  EL100_RS02680 (NCTC3168_00553) comGE 523250..523543 (-) 294 WP_006595134.1 competence type IV pilus minor pilin ComGE -
  EL100_RS02685 comGD/cglD 523509..523934 (-) 426 WP_042507426.1 competence type IV pilus minor pilin ComGD Machinery gene
  EL100_RS02690 (NCTC3168_00555) comYC 523903..524220 (-) 318 WP_023022076.1 competence type IV pilus major pilin ComGC Machinery gene
  EL100_RS02695 (NCTC3168_00556) comYB 524217..525239 (-) 1023 WP_126403665.1 competence type IV pilus assembly protein ComGB Machinery gene
  EL100_RS02700 (NCTC3168_00557) comYA 525181..526122 (-) 942 WP_126403664.1 competence type IV pilus ATPase ComGA Machinery gene
  EL100_RS02705 (NCTC3168_00558) - 526229..526606 (-) 378 WP_048717460.1 DUF1033 family protein -
  EL100_RS02710 (NCTC3168_00559) - 526814..527917 (-) 1104 WP_126403663.1 glycosyl hydrolase family 8 -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15748.24 Da        Isoelectric Point: 7.2775

>NTDB_id=1120161 EL100_RS02685 WP_042507426.1 523509..523934(-) (comGD/cglD) [Streptococcus australis strain NCTC3168]
MQVITVRLQIKAFTLLESLLTLGIVSLLCWLLAGSVHQAFGQVEETLFFSEFERVYQETQKMSIAKEERALLSIDHGGVH
SPYQELPLPKGVEVVREKQLTFDPAGGNSSLTKIQFQTEKEVVTYQLAIGNGKIKKSTAPR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=1120161 EL100_RS02685 WP_042507426.1 523509..523934(-) (comGD/cglD) [Streptococcus australis strain NCTC3168]
ATGCAGGTGATCACCGTGCGGTTGCAGATTAAAGCTTTCACCCTTCTAGAGAGCTTACTAACTCTAGGTATCGTCAGTCT
TCTATGTTGGCTGCTAGCTGGGTCAGTCCATCAAGCCTTTGGGCAGGTGGAAGAAACATTGTTTTTCTCGGAATTTGAAC
GGGTCTATCAGGAGACACAAAAGATGAGTATTGCAAAAGAGGAGAGAGCTCTCCTTTCCATCGACCACGGTGGGGTTCAT
AGTCCCTATCAAGAATTACCGCTTCCAAAAGGGGTGGAAGTGGTCAGAGAGAAGCAACTGACCTTTGATCCAGCAGGAGG
CAATTCAAGCCTGACCAAGATTCAATTTCAGACAGAGAAAGAGGTGGTGACTTATCAGTTGGCAATTGGGAATGGAAAAA
TTAAAAAATCGACGGCTCCCCGCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD/cglD Streptococcus mitis NCTC 12261

52.713

91.489

0.482
  comGD/cglD Streptococcus pneumoniae TIGR4

52.756

90.071

0.475
  comGD/cglD Streptococcus pneumoniae D39

51.969

90.071

0.468
  comGD/cglD Streptococcus pneumoniae R6

51.969

90.071

0.468
  comGD/cglD Streptococcus pneumoniae Rx1

51.969

90.071

0.468
  comYD Streptococcus gordonii str. Challis substr. CH1

50

93.617

0.468
  comGD/cglD Streptococcus mitis SK321

51.181

90.071

0.461
  comYD Streptococcus mutans UA140

48.462

92.199

0.447
  comYD Streptococcus mutans UA159

48.462

92.199

0.447

Multiple sequence alignment