Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   EL078_RS01805 Genome accession   NZ_LR134282
Coordinates   334779..335255 (+) Length   158 a.a.
NCBI ID   WP_024344741.1    Uniprot ID   -
Organism   Streptococcus equinus strain NCTC8140     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 329779..340255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL078_RS01805 (NCTC8140_00359) comX/sigX 334779..335255 (+) 477 WP_024344741.1 competence protein ComX Regulator
  EL078_RS01810 (NCTC8140_00360) - 335292..336650 (-) 1359 WP_126437601.1 aspartate kinase -
  EL078_RS01815 (NCTC8140_00361) - 336751..337407 (+) 657 WP_033151962.1 HAD family hydrolase -
  EL078_RS01820 (NCTC8140_00362) - 337590..338378 (+) 789 WP_033151963.1 enoyl-CoA hydratase -
  EL078_RS01825 (NCTC8140_00363) - 338494..338928 (+) 435 WP_074484027.1 MarR family winged helix-turn-helix transcriptional regulator -
  EL078_RS01830 (NCTC8140_00364) - 338931..339905 (+) 975 WP_074480745.1 beta-ketoacyl-ACP synthase III -
  EL078_RS01835 (NCTC8140_00365) - 339964..340188 (+) 225 WP_003067534.1 acyl carrier protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 19328.16 Da        Isoelectric Point: 8.7333

>NTDB_id=1119961 EL078_RS01805 WP_024344741.1 334779..335255(+) (comX/sigX) [Streptococcus equinus strain NCTC8140]
MDFESYFETVKPIILKLRRHYFVKLWDYDDWIQEGRIVFFKLLQEHPEVLINEGRRYTYFKTKFSNHVKDTIRHQESFKR
KFNRMPYEEIGEISHCVPQLNFFEVADFIAYRDSLSQLKATLSLEEQEKLAKVVRGERFEGKKAFLRQIEPYFSDFKH

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1119961 EL078_RS01805 WP_024344741.1 334779..335255(+) (comX/sigX) [Streptococcus equinus strain NCTC8140]
GTGGATTTTGAAAGCTATTTTGAAACTGTAAAACCAATTATTTTAAAATTAAGACGTCATTACTTTGTGAAATTATGGGA
TTATGACGACTGGATTCAGGAAGGGCGTATTGTCTTTTTCAAACTACTGCAAGAACATCCTGAGGTTCTGATTAATGAGG
GAAGACGCTATACTTACTTCAAGACAAAATTTTCTAATCATGTAAAGGATACCATCCGCCATCAGGAATCCTTTAAACGT
AAATTTAATCGTATGCCTTATGAAGAAATAGGTGAGATTAGTCATTGTGTCCCTCAGCTTAATTTTTTTGAAGTGGCAGA
CTTTATTGCTTACCGAGATAGTTTATCTCAATTAAAAGCAACTTTAAGCTTAGAAGAGCAAGAAAAGCTAGCAAAAGTAG
TCAGAGGGGAACGATTTGAAGGGAAAAAGGCCTTCTTACGCCAAATTGAACCTTACTTTTCTGACTTTAAGCACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.