Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   EL078_RS01535 Genome accession   NZ_LR134282
Coordinates   278843..279319 (+) Length   158 a.a.
NCBI ID   WP_024344741.1    Uniprot ID   -
Organism   Streptococcus equinus strain NCTC8140     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 273843..284319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL078_RS01535 (NCTC8140_00306) comX/sigX 278843..279319 (+) 477 WP_024344741.1 competence protein ComX Regulator
  EL078_RS01540 (NCTC8140_00307) - 279518..279784 (+) 267 WP_021141631.1 ACT domain-containing protein -
  EL078_RS01545 (NCTC8140_00308) - 279796..281133 (+) 1338 WP_024344742.1 PFL family protein -
  EL078_RS01550 (NCTC8140_00309) - 281331..282035 (+) 705 WP_024344743.1 histidine phosphatase family protein -
  EL078_RS01555 (NCTC8140_00310) - 282019..282792 (+) 774 WP_074639782.1 M15 family metallopeptidase -
  EL078_RS01560 (NCTC8140_00311) - 282789..283379 (+) 591 WP_024344745.1 glycoside hydrolase family 73 protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 19328.16 Da        Isoelectric Point: 8.7333

>NTDB_id=1119957 EL078_RS01535 WP_024344741.1 278843..279319(+) (comX/sigX) [Streptococcus equinus strain NCTC8140]
MDFESYFETVKPIILKLRRHYFVKLWDYDDWIQEGRIVFFKLLQEHPEVLINEGRRYTYFKTKFSNHVKDTIRHQESFKR
KFNRMPYEEIGEISHCVPQLNFFEVADFIAYRDSLSQLKATLSLEEQEKLAKVVRGERFEGKKAFLRQIEPYFSDFKH

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1119957 EL078_RS01535 WP_024344741.1 278843..279319(+) (comX/sigX) [Streptococcus equinus strain NCTC8140]
GTGGATTTTGAAAGCTATTTTGAAACTGTAAAACCAATTATTTTAAAATTAAGACGTCATTACTTTGTGAAATTATGGGA
TTATGACGACTGGATTCAGGAAGGGCGTATTGTCTTTTTCAAACTACTGCAAGAACATCCTGAGGTTCTGATTAATGAGG
GAAGACGCTATACTTACTTCAAGACAAAATTTTCTAATCATGTAAAGGATACCATCCGCCATCAGGAATCCTTTAAACGT
AAATTTAATCGTATGCCTTATGAAGAAATAGGTGAGATTAGTCATTGTGTCCCTCAGCTTAATTTTTTTGAAGTGGCAGA
CTTTATTGCTTACCGAGATAGTTTATCTCAATTAAAAGCAACTTTAAGCTTAGAAGAGCAAGAAAAGCTAGCAAAAGTAG
TCAGAGGGGAACGATTTGAAGGGAAAAAGGCCTTCTTACGCCAAATTGAACCTTACTTTTCTGACTTTAAGCACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.