Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   EL076_RS09130 Genome accession   NZ_LR134275
Coordinates   1804622..1804948 (-) Length   108 a.a.
NCBI ID   WP_002885815.1    Uniprot ID   -
Organism   Streptococcus vestibularis strain NCTC12167     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1799622..1809948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL076_RS10515 - 1800120..1800590 (-) 471 WP_082901122.1 CAAX protease -
  EL076_RS09095 (NCTC12167_01794) - 1800577..1800774 (-) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  EL076_RS09100 (NCTC12167_01795) - 1801002..1802195 (-) 1194 WP_064520007.1 acetate kinase -
  EL076_RS09105 (NCTC12167_01796) comYH 1802252..1803208 (-) 957 WP_126430075.1 class I SAM-dependent methyltransferase Machinery gene
  EL076_RS09110 (NCTC12167_01797) comGG 1803253..1803570 (-) 318 WP_003092009.1 competence type IV pilus minor pilin ComGG -
  EL076_RS09115 (NCTC12167_01798) comYF 1803548..1803985 (-) 438 WP_003091908.1 competence type IV pilus minor pilin ComGF Machinery gene
  EL076_RS09120 (NCTC12167_01799) comGE 1803972..1804202 (-) 231 WP_003095891.1 competence type IV pilus minor pilin ComGE -
  EL076_RS09125 (NCTC12167_01800) comYD 1804234..1804662 (-) 429 WP_253665936.1 competence type IV pilus minor pilin ComGD Machinery gene
  EL076_RS09130 (NCTC12167_01801) comYC 1804622..1804948 (-) 327 WP_002885815.1 competence type IV pilus major pilin ComGC Machinery gene
  EL076_RS09135 (NCTC12167_01802) comYB 1804945..1806045 (-) 1101 WP_126430077.1 competence type IV pilus assembly protein ComGB Machinery gene
  EL076_RS09140 (NCTC12167_01803) comGA/cglA/cilD 1805927..1806868 (-) 942 WP_126430079.1 competence type IV pilus ATPase ComGA Machinery gene
  EL076_RS09145 (NCTC12167_01804) tnpA 1807052..1807516 (-) 465 WP_002883780.1 IS200/IS605 family transposase -
  EL076_RS09150 (NCTC12167_01805) - 1807715..1808077 (-) 363 WP_126430081.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 11932.03 Da        Isoelectric Point: 9.9219

>NTDB_id=1119917 EL076_RS09130 WP_002885815.1 1804622..1804948(-) (comYC) [Streptococcus vestibularis strain NCTC12167]
MKMMLKKLNAVKLRAFTLIEMLVVLLIISILLLLFVPNLSKQKDSVKETGNAAVVKVVDSQAELYEMKNNKTASLAALVS
EGQITQKQADSYNDYYAKHGGESRSVAN

Nucleotide


Download         Length: 327 bp        

>NTDB_id=1119917 EL076_RS09130 WP_002885815.1 1804622..1804948(-) (comYC) [Streptococcus vestibularis strain NCTC12167]
ATGAAAATGATGTTAAAAAAATTGAATGCCGTTAAACTACGAGCTTTTACACTGATTGAAATGTTGGTCGTGCTTCTCAT
TATCAGTATTCTCCTTTTGCTCTTTGTACCTAACTTGAGCAAGCAGAAGGATTCTGTTAAAGAGACTGGAAATGCGGCTG
TGGTCAAGGTCGTGGATTCTCAAGCAGAACTTTATGAAATGAAGAATAACAAGACAGCTAGCTTAGCCGCTCTTGTTTCA
GAAGGTCAAATCACGCAAAAACAGGCAGATTCATACAATGATTATTATGCGAAACATGGTGGCGAAAGCCGCTCAGTGGC
CAATTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(14-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus mutans UA140

69.231

96.296

0.667
  comYC Streptococcus mutans UA159

69.231

96.296

0.667
  comYC Streptococcus gordonii str. Challis substr. CH1

63.81

97.222

0.62
  comGC/cglC Streptococcus mitis SK321

62.264

98.148

0.611
  comGC/cglC Streptococcus mitis NCTC 12261

58.333

100

0.583
  comGC/cglC Streptococcus pneumoniae D39

58.491

98.148

0.574
  comGC/cglC Streptococcus pneumoniae R6

58.491

98.148

0.574
  comGC/cglC Streptococcus pneumoniae Rx1

58.491

98.148

0.574
  comGC/cglC Streptococcus pneumoniae TIGR4

58.491

98.148

0.574
  comGC Lactococcus lactis subsp. cremoris KW2

56.604

98.148

0.556
  comYC Streptococcus suis isolate S10

60.227

81.481

0.491
  comGC Staphylococcus aureus MW2

50

72.222

0.361
  comGC Staphylococcus aureus N315

50

72.222

0.361

Multiple sequence alignment