Detailed information NTG1119916

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: EL076_RS09125
• Genome accession: NZ_LR134275
• Coordinates: 1804234..1804662 (-)
• Length: 142 a.a.
• NCBI ID: WP_253665936.1
• Uniprot ID: -
• Organism: Streptococcus vestibularis strain NCTC12167
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1799234..1809662

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL076_RS09085 (NCTC12167_01792)	-	1799358..1800020 (-)	663	WP_003095899.1	CPBP family intramembrane glutamic endopeptidase	-
EL076_RS10515	-	1800120..1800590 (-)	471	WP_082901122.1	CAAX protease	-
EL076_RS09095 (NCTC12167_01794)	-	1800577..1800774 (-)	198	WP_002885716.1	helix-turn-helix transcriptional regulator	-
EL076_RS09100 (NCTC12167_01795)	-	1801002..1802195 (-)	1194	WP_064520007.1	acetate kinase	-
EL076_RS09105 (NCTC12167_01796)	comYH	1802252..1803208 (-)	957	WP_126430075.1	class I SAM-dependent methyltransferase	Machinery gene
EL076_RS09110 (NCTC12167_01797)	comGG	1803253..1803570 (-)	318	WP_003092009.1	competence type IV pilus minor pilin ComGG	-
EL076_RS09115 (NCTC12167_01798)	comYF	1803548..1803985 (-)	438	WP_003091908.1	competence type IV pilus minor pilin ComGF	Machinery gene
EL076_RS09120 (NCTC12167_01799)	comGE	1803972..1804202 (-)	231	WP_003095891.1	competence type IV pilus minor pilin ComGE	-
EL076_RS09125 (NCTC12167_01800)	comYD	1804234..1804662 (-)	429	WP_253665936.1	competence type IV pilus minor pilin ComGD	Machinery gene
EL076_RS09130 (NCTC12167_01801)	comYC	1804622..1804948 (-)	327	WP_002885815.1	competence type IV pilus major pilin ComGC	Machinery gene
EL076_RS09135 (NCTC12167_01802)	comYB	1804945..1806045 (-)	1101	WP_126430077.1	competence type IV pilus assembly protein ComGB	Machinery gene
EL076_RS09140 (NCTC12167_01803)	comGA/cglA/cilD	1805927..1806868 (-)	942	WP_126430079.1	competence type IV pilus ATPase ComGA	Machinery gene
EL076_RS09145 (NCTC12167_01804)	tnpA	1807052..1807516 (-)	465	WP_002883780.1	IS200/IS605 family transposase	-
EL076_RS09150 (NCTC12167_01805)	-	1807715..1808077 (-)	363	WP_126430081.1	DUF1033 family protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15725.26 Da
• Isoelectric Point: 10.6105

>NTDB_id=1119916 EL076_RS09125 WP_253665936.1 1804234..1804662(-) (comYD) [Streptococcus vestibularis strain NCTC12167]
MRNMVAKAAQWPIRAFTLLESLVTLAVVAFLTLSLSGSVTGIFQQVETNLFYLRFEYLYRDSQRLAAAKGANVELQLTKD
KISNGKSSLVIPKNIHLDKGQTLVFNAKGGNSSLTKIRFSSDKEVVTYQLNMGSGKYKKTVS

Nucleotide

• Length: 429 bp

>NTDB_id=1119916 EL076_RS09125 WP_253665936.1 1804234..1804662(-) (comYD) [Streptococcus vestibularis strain NCTC12167]
ATGCGAAACATGGTGGCGAAAGCCGCTCAGTGGCCAATTAGAGCCTTTACCTTGTTGGAGAGTCTGGTGACTCTAGCAGT
GGTTGCCTTTCTCACTCTGAGTTTGTCAGGCTCAGTCACAGGTATTTTTCAGCAGGTTGAGACTAATCTTTTTTATCTGC
GCTTTGAGTACCTATACCGAGATAGTCAGCGATTGGCAGCGGCGAAAGGGGCCAATGTTGAATTGCAGTTGACCAAGGAT
AAAATCAGTAACGGAAAATCCAGTCTGGTGATTCCTAAAAATATTCATCTGGATAAGGGGCAGACGCTAGTGTTTAATGC
CAAAGGAGGTAACTCTAGCCTCACGAAGATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCAGCTTAACATGGGCA
GCGGTAAATATAAAAAGACGGTCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	54.198	92.254	0.5
comYD	Streptococcus mutans UA159	54.198	92.254	0.5
comYD	Streptococcus gordonii str. Challis substr. CH1	41.429	98.592	0.408
comGD/cglD	Streptococcus pneumoniae Rx1	44.882	89.437	0.401
comGD/cglD	Streptococcus pneumoniae D39	44.882	89.437	0.401
comGD/cglD	Streptococcus pneumoniae R6	44.882	89.437	0.401
comGD/cglD	Streptococcus mitis NCTC 12261	44.882	89.437	0.401
comGD/cglD	Streptococcus mitis SK321	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae TIGR4	44.094	89.437	0.394
comGD	Lactococcus lactis subsp. cremoris KW2	40.152	92.958	0.373