Detailed information NTG1119544

Bioinformatically predicted

Overview

• Name: comYC
• Type: Machinery gene
• Locus tag: EL081_RS01075
• Genome accession: NZ_LR134266
• Coordinates: 186382..186699 (+)
• Length: 105 a.a.
• NCBI ID: WP_023022076.1
• Uniprot ID: -
• Organism: Streptococcus viridans strain NCTC3166
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 181382..191699

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL081_RS01055 (NCTC3166_00214)	-	182685..183788 (+)	1104	WP_126403663.1	glycosyl hydrolase family 8	-
EL081_RS01060 (NCTC3166_00215)	-	183996..184373 (+)	378	WP_048717460.1	DUF1033 family protein	-
EL081_RS01065 (NCTC3166_00216)	comYA	184480..185421 (+)	942	WP_126403664.1	competence type IV pilus ATPase ComGA	Machinery gene
EL081_RS01070 (NCTC3166_00217)	comYB	185363..186385 (+)	1023	WP_126403665.1	competence type IV pilus assembly protein ComGB	Machinery gene
EL081_RS01075 (NCTC3166_00218)	comYC	186382..186699 (+)	318	WP_023022076.1	competence type IV pilus major pilin ComGC	Machinery gene
EL081_RS01080	comGD/cglD	186668..187093 (+)	426	WP_042507426.1	competence type IV pilus minor pilin ComGD	Machinery gene
EL081_RS01085 (NCTC3166_00220)	comGE	187059..187352 (+)	294	WP_006595134.1	competence type IV pilus minor pilin ComGE	-
EL081_RS01090 (NCTC3166_00221)	comGF/cglF	187336..187788 (+)	453	WP_048717662.1	competence type IV pilus minor pilin ComGF	Machinery gene
EL081_RS01095 (NCTC3166_00222)	comGG	187754..188200 (+)	447	WP_126403667.1	competence type IV pilus minor pilin ComGG	-
EL081_RS01100 (NCTC3166_00223)	comYH	188232..189185 (+)	954	WP_126403668.1	class I SAM-dependent methyltransferase	Machinery gene
EL081_RS01105 (NCTC3166_00224)	-	189234..190430 (+)	1197	WP_126403669.1	acetate kinase	-
EL081_RS01110 (NCTC3166_00225)	-	190583..191257 (+)	675	WP_224781595.1	type II CAAX endopeptidase family protein	-

Sequence

Protein

• Length: 105 a.a.
• Molecular weight: 11703.65 Da
• Isoelectric Point: 9.8248

>NTDB_id=1119544 EL081_RS01075 WP_023022076.1 186382..186699(+) (comYC) [Streptococcus viridans strain NCTC3166]
MKSLRTLKVKAFTLIEMLVVLLIISVLLLLFVPNLTKQKDSVTDTGNRAVVKVVESQAELYELNHQNEKASLSKLVAEGQ
ITQKQAEAYRAHYVKNAGDHRAVAD

Nucleotide

• Length: 318 bp

>NTDB_id=1119544 EL081_RS01075 WP_023022076.1 186382..186699(+) (comYC) [Streptococcus viridans strain NCTC3166]
ATGAAATCATTGCGCACACTCAAGGTAAAAGCTTTTACTCTGATTGAAATGTTAGTTGTTTTGCTCATTATCAGCGTTCT
TCTCTTGCTCTTTGTTCCGAACTTGACCAAGCAGAAAGATTCGGTAACAGATACAGGAAATCGAGCAGTCGTCAAAGTCG
TGGAGAGCCAGGCTGAGCTCTATGAACTCAATCATCAGAATGAAAAAGCTAGTCTTTCTAAGCTAGTCGCAGAAGGACAA
ATCACTCAAAAACAAGCAGAAGCCTACCGTGCTCACTATGTGAAGAATGCAGGTGATCACCGTGCGGTTGCAGATTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (8-30)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGC/cglC	Streptococcus mitis SK321	69.524	100	0.695
comYC	Streptococcus gordonii str. Challis substr. CH1	69.524	100	0.695
comYC	Streptococcus mutans UA140	67.619	100	0.676
comYC	Streptococcus mutans UA159	67.619	100	0.676
comGC/cglC	Streptococcus pneumoniae TIGR4	66.667	100	0.667
comGC/cglC	Streptococcus pneumoniae D39	66.667	100	0.667
comGC/cglC	Streptococcus pneumoniae Rx1	66.667	100	0.667
comGC/cglC	Streptococcus mitis NCTC 12261	66.667	100	0.667
comGC/cglC	Streptococcus pneumoniae R6	66.667	100	0.667
comGC	Lactococcus lactis subsp. cremoris KW2	61.224	93.333	0.571
comYC	Streptococcus suis isolate S10	64.045	84.762	0.543
comGC	Staphylococcus aureus MW2	51.282	74.286	0.381
comGC	Staphylococcus aureus N315	51.282	74.286	0.381