Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC/cglC   Type   Machinery gene
Locus tag   ACN076_RS00255 Genome accession   NZ_CP184836
Coordinates   39690..40013 (-) Length   107 a.a.
NCBI ID   WP_000738641.1    Uniprot ID   -
Organism   Streptococcus sp. K0074     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 34690..45013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN076_RS00215 (ACN076_00215) rnpA 34817..35188 (-) 372 WP_000739245.1 ribonuclease P protein component -
  ACN076_RS00220 (ACN076_00220) - 35338..36528 (-) 1191 WP_049521853.1 acetate kinase -
  ACN076_RS00225 (ACN076_00225) comYH 36579..37532 (-) 954 WP_420789950.1 class I SAM-dependent methyltransferase Machinery gene
  ACN076_RS00230 (ACN076_00230) - 37593..38180 (-) 588 WP_194250511.1 class I SAM-dependent methyltransferase -
  ACN076_RS00235 (ACN076_00235) comGG/cglG 38213..38626 (-) 414 WP_203176437.1 competence type IV pilus minor pilin ComGG Machinery gene
  ACN076_RS00240 (ACN076_00240) comGF/cglF 38604..39065 (-) 462 WP_061457600.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACN076_RS00245 (ACN076_00245) comGE/cglE 39028..39330 (-) 303 WP_000413380.1 competence type IV pilus minor pilin ComGE Machinery gene
  ACN076_RS00250 (ACN076_00250) comGD/cglD 39293..39727 (-) 435 WP_194250512.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACN076_RS00255 (ACN076_00255) comGC/cglC 39690..40013 (-) 324 WP_000738641.1 comG operon protein ComGC Machinery gene
  ACN076_RS00260 (ACN076_00260) comGB/cglB 40015..41058 (-) 1044 WP_153193868.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACN076_RS00265 (ACN076_00265) comGA/cglA/cilD 40979..41920 (-) 942 WP_420789951.1 competence type IV pilus ATPase ComGA Machinery gene
  ACN076_RS00270 (ACN076_00270) - 41997..42362 (-) 366 WP_000286413.1 DUF1033 family protein -
  ACN076_RS00275 (ACN076_00275) - 42513..43571 (-) 1059 WP_153193870.1 zinc-dependent alcohol dehydrogenase family protein -
  ACN076_RS00280 (ACN076_00280) nagA 43733..44884 (-) 1152 WP_153193871.1 N-acetylglucosamine-6-phosphate deacetylase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 11958.09 Da        Isoelectric Point: 9.9097

>NTDB_id=1111412 ACN076_RS00255 WP_000738641.1 39690..40013(-) (comGC/cglC) [Streptococcus sp. K0074]
MKKMMTFLKKAKVKAFTLVEMLVVLLIISVLLLLFVPNLTKQKEAVNDKGKAAVVKVVESQAELYSLDKNEDASLSKLQA
DGRITEEQAKAYKEYHAKQNTSQTVAD

Nucleotide


Download         Length: 324 bp        

>NTDB_id=1111412 ACN076_RS00255 WP_000738641.1 39690..40013(-) (comGC/cglC) [Streptococcus sp. K0074]
ATGAAAAAAATGATGACATTCTTGAAAAAAGCTAAGGTTAAAGCTTTTACACTTGTGGAGATGTTAGTGGTCCTTTTAAT
CATCAGCGTGCTTCTCTTGCTCTTTGTACCTAATTTGACCAAGCAAAAAGAGGCGGTCAATGACAAAGGAAAAGCTGCTG
TTGTTAAGGTGGTGGAAAGCCAGGCAGAGCTTTATAGCTTAGATAAAAATGAAGATGCTAGCCTAAGTAAGTTACAAGCA
GATGGGCGAATCACAGAAGAACAGGCTAAAGCTTATAAAGAATACCATGCTAAACAAAATACCAGTCAAACCGTTGCAGA
TTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC/cglC Streptococcus mitis NCTC 12261

100

100

1
  comGC/cglC Streptococcus mitis SK321

93.204

96.262

0.897
  comGC/cglC Streptococcus pneumoniae Rx1

92.157

95.327

0.879
  comGC/cglC Streptococcus pneumoniae D39

92.157

95.327

0.879
  comGC/cglC Streptococcus pneumoniae R6

92.157

95.327

0.879
  comGC/cglC Streptococcus pneumoniae TIGR4

90.291

96.262

0.869
  comYC Streptococcus gordonii str. Challis substr. CH1

69.524

98.131

0.682
  comYC Streptococcus mutans UA140

68.421

88.785

0.607
  comYC Streptococcus mutans UA159

68.421

88.785

0.607
  comYC Streptococcus suis isolate S10

70.37

75.701

0.533
  comGC Lactococcus lactis subsp. cremoris KW2

54.455

94.393

0.514
  comGC Staphylococcus aureus MW2

51.163

80.374

0.411
  comGC Staphylococcus aureus N315

51.163

80.374

0.411

Multiple sequence alignment