Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   ACMHYC_RS02045 Genome accession   NZ_CP180027
Coordinates   436004..436426 (+) Length   140 a.a.
NCBI ID   WP_414659602.1    Uniprot ID   -
Organism   Acinetobacter courvalinii isolate 2024CK-01798     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 431004..441426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMHYC_RS02025 (ACMHYC_02025) - 432258..433148 (+) 891 WP_262475680.1 metal-dependent hydrolase -
  ACMHYC_RS02030 (ACMHYC_02030) - 433328..433918 (+) 591 WP_005227639.1 LemA family protein -
  ACMHYC_RS02035 (ACMHYC_02035) - 433956..435023 (+) 1068 WP_414659600.1 TPM domain-containing protein -
  ACMHYC_RS02040 (ACMHYC_02040) - 435017..435577 (+) 561 WP_414659601.1 TPM domain-containing protein -
  ACMHYC_RS02045 (ACMHYC_02045) pilA 436004..436426 (+) 423 WP_414659602.1 pilin Machinery gene
  ACMHYC_RS02050 (ACMHYC_02050) - 436499..438430 (+) 1932 WP_414659603.1 tetratricopeptide repeat protein -
  ACMHYC_RS02055 (ACMHYC_02055) - 438405..439271 (+) 867 WP_414659604.1 glycosyltransferase family 2 protein -
  ACMHYC_RS02060 (ACMHYC_02060) - 439280..440986 (+) 1707 WP_414659605.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 14463.71 Da        Isoelectric Point: 9.9263

>NTDB_id=1094079 ACMHYC_RS02045 WP_414659602.1 436004..436426(+) (pilA) [Acinetobacter courvalinii isolate 2024CK-01798]
MKSMQKGFTLIELMIVVAIIGILAAIAIPAYQNYTKRSHVSEGLNLAGGAKTAVTEFYSSNNRYPANNASAGLAAASAIT
GNAVTSVTVASGLITVAYNTKIDDTTGKTLVLSPTTAGGAIQWKCKVGTIDPKLVPSNCR

Nucleotide


Download         Length: 423 bp        

>NTDB_id=1094079 ACMHYC_RS02045 WP_414659602.1 436004..436426(+) (pilA) [Acinetobacter courvalinii isolate 2024CK-01798]
ATGAAATCAATGCAAAAGGGTTTTACTCTTATCGAATTGATGATCGTTGTGGCGATCATTGGTATCTTGGCTGCGATTGC
AATTCCTGCTTATCAAAATTATACGAAACGTTCGCACGTTTCCGAAGGACTTAACCTCGCAGGAGGAGCAAAAACTGCAG
TAACAGAATTCTATTCATCGAATAACCGTTATCCTGCAAATAATGCAAGTGCAGGTTTAGCTGCTGCAAGTGCTATTACT
GGTAATGCTGTAACATCTGTTACTGTAGCTAGTGGTTTAATTACGGTTGCATATAATACAAAAATTGATGATACAACTGG
TAAAACTCTTGTTCTAAGTCCGACAACTGCTGGTGGCGCAATCCAATGGAAATGTAAAGTGGGTACTATTGATCCTAAAT
TAGTTCCATCTAATTGTCGTTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(37-140)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Ralstonia pseudosolanacearum GMI1000

43.023

100

0.529
  pilE Neisseria gonorrhoeae strain FA1090

45.342

100

0.521
  pilE Neisseria gonorrhoeae MS11

44.444

100

0.514
  pilA2 Legionella pneumophila str. Paris

51.825

97.857

0.507
  pilA2 Legionella pneumophila strain ERS1305867

51.095

97.857

0.5
  comP Acinetobacter baylyi ADP1

46.575

100

0.486
  pilA/pilA1 Eikenella corrodens VA1

38.462

100

0.429
  pilA/pilAII Pseudomonas stutzeri DSM 10701

41.135

100

0.414
  pilA Haemophilus influenzae 86-028NP

40.426

100

0.407
  pilA Pseudomonas aeruginosa PAK

37.838

100

0.4
  pilA Acinetobacter baumannii strain A118

39.007

100

0.393
  pilA/pilAI Pseudomonas stutzeri DSM 10701

38.732

100

0.393
  pilA Haemophilus influenzae Rd KW20

38.849

99.286

0.386
  pilA Glaesserella parasuis strain SC1401

37.063

100

0.379

Multiple sequence alignment