Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   ACINK0_RS09750 Genome accession   NZ_CP179945
Coordinates   1915231..1916523 (+) Length   430 a.a.
NCBI ID   WP_339096541.1    Uniprot ID   -
Organism   Deinococcus sp. VB343     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1910231..1921523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACINK0_RS09735 (ACINK0_09735) pgeF 1911102..1911863 (+) 762 WP_339096546.1 peptidoglycan editing factor PgeF -
  ACINK0_RS09740 (ACINK0_09740) - 1911860..1912366 (+) 507 WP_414656575.1 YqeG family HAD IIIA-type phosphatase -
  ACINK0_RS09745 (ACINK0_09745) pilB 1912517..1915180 (+) 2664 WP_414656576.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  ACINK0_RS09750 (ACINK0_09750) pilT 1915231..1916523 (+) 1293 WP_339096541.1 type IV pilus twitching motility protein PilT Machinery gene
  ACINK0_RS09755 (ACINK0_09755) - 1916680..1917165 (-) 486 WP_339096540.1 hypothetical protein -
  ACINK0_RS09760 (ACINK0_09760) - 1917239..1917889 (-) 651 WP_339096539.1 ankyrin repeat domain-containing protein -
  ACINK0_RS09765 (ACINK0_09765) - 1917973..1919172 (-) 1200 WP_339096538.1 acetyl-CoA C-acetyltransferase -
  ACINK0_RS09770 (ACINK0_09770) - 1919182..1919766 (-) 585 WP_414656577.1 nucleotidyltransferase family protein -
  ACINK0_RS09775 (ACINK0_09775) - 1919763..1920746 (-) 984 WP_339096536.1 ADP-ribosylglycohydrolase family protein -
  ACINK0_RS09780 (ACINK0_09780) - 1920743..1921186 (-) 444 WP_414656578.1 hypothetical protein -

Sequence

Protein


Download         Length: 430 a.a.        Molecular weight: 45823.19 Da        Isoelectric Point: 7.5184

>NTDB_id=1094065 ACINK0_RS09750 WP_339096541.1 1915231..1916523(+) (pilT) [Deinococcus sp. VB343]
MTMTSGIDITDILRVAADKGASDIILAAGLPPQFKLSGVYDSQGFEPLAATDTRKLMYSMMNERQQRTFEEKRELDFSFA
LGDKARFRVNAFMQRGNVGGVMRLIPTTVKTIAEMGLPQTVIDIANAPRGLVLVTGPTGSGKSTTLASMIDHINQTKKVH
ILTIEDPIEFMHPNKASIINQREVGADTLSFNDALRAALRQAPDVILVGEMRDYETIKAAVTAAETGHLVMGTLHTNSAP
ESIDRIVDVFPEEQQEQIRVQLANNLVAVMTQQLLPRADGQGRVLAYEILIANPAVRALIREGKTFQITSVMQTGAREGM
VTMDAYLAGLFRRHQITYDKGLERAVDPKEFARLANDPSAGLGGAGSAPAAAPIPAYGGAVGGGSAGTGRGGDYGRGAAA
PAAPTAPARPETPRSDSGRDPGRGGGFGRR

Nucleotide


Download         Length: 1293 bp        

>NTDB_id=1094065 ACINK0_RS09750 WP_339096541.1 1915231..1916523(+) (pilT) [Deinococcus sp. VB343]
ATGACCATGACTTCCGGCATCGACATCACCGACATCCTGCGTGTCGCCGCCGACAAGGGCGCGTCCGACATCATCCTGGC
GGCGGGCCTGCCCCCCCAGTTCAAGCTCTCCGGGGTCTACGATTCGCAGGGCTTCGAGCCGTTGGCCGCCACGGACACCC
GCAAACTGATGTACTCGATGATGAACGAGCGTCAGCAGCGCACCTTCGAGGAAAAGCGCGAACTCGACTTTTCGTTTGCG
CTGGGCGACAAAGCCCGCTTCCGCGTCAACGCCTTCATGCAGCGCGGCAACGTGGGCGGCGTGATGCGCTTGATTCCGAC
CACCGTCAAGACCATTGCCGAGATGGGGTTGCCGCAGACCGTCATCGACATCGCCAACGCGCCGCGTGGCCTCGTGCTGG
TGACTGGGCCGACGGGGTCGGGCAAGTCCACCACGCTCGCTTCCATGATTGACCACATCAATCAGACCAAGAAGGTCCAC
ATCCTGACCATCGAAGACCCCATCGAATTCATGCACCCCAACAAGGCCAGCATCATCAACCAGCGCGAGGTGGGGGCCGA
TACCCTCAGCTTCAACGACGCGTTGCGGGCCGCGCTCAGGCAGGCCCCCGACGTGATTCTGGTGGGCGAAATGCGTGACT
ACGAGACCATCAAGGCCGCCGTGACCGCCGCCGAAACCGGGCATCTCGTGATGGGCACGCTGCACACCAACTCGGCCCCC
GAGTCCATCGACCGTATCGTGGACGTGTTCCCAGAAGAGCAGCAGGAGCAGATTCGCGTGCAGCTCGCCAACAACCTCGT
GGCGGTCATGACCCAGCAGCTTCTGCCCCGCGCCGACGGTCAGGGGCGTGTCCTGGCCTACGAAATCCTGATCGCCAACC
CGGCGGTTCGCGCCCTGATTCGTGAGGGCAAGACCTTCCAGATCACCAGCGTGATGCAGACCGGCGCACGCGAGGGCATG
GTCACGATGGACGCCTACCTCGCCGGACTGTTTCGCAGGCACCAGATCACCTACGACAAGGGCCTGGAACGCGCCGTGGA
CCCCAAGGAATTCGCCCGTCTCGCCAACGACCCCTCGGCGGGTCTGGGTGGCGCCGGTTCAGCCCCGGCAGCGGCGCCGA
TTCCGGCTTACGGCGGCGCGGTCGGCGGAGGAAGCGCGGGCACCGGACGCGGTGGCGACTACGGGCGCGGCGCGGCGGCT
CCGGCAGCCCCCACAGCACCCGCCCGCCCCGAGACACCCCGCAGCGACAGCGGGCGTGATCCGGGCCGGGGCGGAGGCTT
CGGGCGCCGCTAA

Domains

Predicted by InterProScan.

Type II/IV secretion system protein (T2SSE)

(16-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

89.51

99.767

0.893
  pilT Acinetobacter baumannii D1279779

52.754

80.233

0.423
  pilT Acinetobacter baumannii strain A118

52.754

80.233

0.423
  pilT Acinetobacter nosocomialis M2

52.754

80.233

0.423
  pilT Neisseria meningitidis 8013

51.714

81.395

0.421
  pilT Acinetobacter baylyi ADP1

52.174

80.233

0.419
  pilT Pseudomonas stutzeri DSM 10701

52.174

80.233

0.419
  pilT Pseudomonas aeruginosa PAK

52.174

80.233

0.419
  pilT Neisseria gonorrhoeae MS11

51.445

80.465

0.414
  pilT Legionella pneumophila strain Lp02

49.275

80.233

0.395
  pilT Legionella pneumophila strain ERS1305867

49.275

80.233

0.395
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

51.376

76.047

0.391
  pilT Vibrio cholerae strain A1552

51.376

76.047

0.391

Multiple sequence alignment