Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilAII   Type   Regulator
Locus tag   ACL0K2_RS08805 Genome accession   NZ_CP178378
Coordinates   1962120..1962545 (+) Length   141 a.a.
NCBI ID   WP_413044244.1    Uniprot ID   -
Organism   Pseudomonas sp. YJ42     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1957120..1967545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL0K2_RS08785 (ACL0K2_08785) pilD 1957614..1958480 (-) 867 WP_413044241.1 prepilin peptidase Machinery gene
  ACL0K2_RS08790 (ACL0K2_08790) pilC 1958483..1959700 (-) 1218 WP_413044242.1 type II secretion system F family protein Machinery gene
  ACL0K2_RS08795 (ACL0K2_08795) pilB 1959702..1961405 (-) 1704 WP_413044243.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACL0K2_RS08800 (ACL0K2_08800) pilA/pilAI 1961632..1962051 (+) 420 WP_255983138.1 pilin Machinery gene
  ACL0K2_RS08805 (ACL0K2_08805) pilA/pilAII 1962120..1962545 (+) 426 WP_413044244.1 pilin Regulator
  ACL0K2_RS08810 (ACL0K2_08810) - 1962571..1963962 (+) 1392 WP_413044245.1 O-antigen ligase family protein -
  ACL0K2_RS08815 (ACL0K2_08815) tfpZ 1963971..1964705 (+) 735 WP_413044246.1 TfpX/TfpZ family type IV pilin accessory protein -
  ACL0K2_RS08820 (ACL0K2_08820) - 1964988..1965125 (+) 138 WP_413044247.1 YtoQ family protein -
  ACL0K2_RS08825 (ACL0K2_08825) - 1965110..1965379 (-) 270 Protein_1733 TonB-dependent receptor plug domain-containing protein -
  ACL0K2_RS08830 (ACL0K2_08830) - 1965381..1965716 (+) 336 Protein_1734 YtoQ family protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 14700.14 Da        Isoelectric Point: 8.3527

>NTDB_id=1089232 ACL0K2_RS08805 WP_413044244.1 1962120..1962545(+) (pilA/pilAII) [Pseudomonas sp. YJ42]
MRFVKMSCRGFSLIELMIVIAIIGILAAIAFPAYQNHTVRSTAAAALAEITPAKAAFEQAISEGHTPSLVSSLPGFIGIG
ASTSYCTVTLIAAAPGSITCTTQNGMPGRFNGKIISLTRTAEGLWGCTSDLDSQYKPGKCL

Nucleotide


Download         Length: 426 bp        

>NTDB_id=1089232 ACL0K2_RS08805 WP_413044244.1 1962120..1962545(+) (pilA/pilAII) [Pseudomonas sp. YJ42]
ATGAGGTTTGTGAAAATGTCGTGCCGCGGCTTTTCTCTGATTGAGTTGATGATCGTGATAGCTATTATCGGAATTCTTGC
GGCCATCGCGTTTCCCGCCTATCAGAACCACACCGTGCGTTCGACAGCCGCTGCCGCCCTGGCCGAAATCACTCCAGCAA
AGGCCGCCTTCGAGCAGGCCATCAGCGAAGGCCATACCCCTTCACTTGTTTCCAGTCTGCCGGGCTTTATCGGCATCGGC
GCGAGCACCAGCTACTGCACAGTAACTCTCATTGCCGCGGCACCGGGATCAATCACCTGCACCACCCAGAACGGCATGCC
AGGGCGGTTCAACGGAAAAATTATCTCCCTCACCCGCACGGCGGAGGGCTTGTGGGGCTGCACCAGCGACCTGGACAGCC
AGTATAAGCCAGGGAAATGCCTCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(6-31)

Pilin (bacterial filament) (Pilin)

(39-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilAII Pseudomonas stutzeri DSM 10701

86.525

100

0.865
  pilA/pilAI Pseudomonas stutzeri DSM 10701

67.424

93.617

0.631
  pilA Pseudomonas aeruginosa PAK

43.836

100

0.454
  pilA Acinetobacter baumannii strain A118

43.066

97.163

0.418
  comP Acinetobacter baylyi ADP1

39.189

100

0.411
  pilA2 Legionella pneumophila strain ERS1305867

37.143

99.291

0.369
  pilA2 Legionella pneumophila str. Paris

36.429

99.291

0.362
  pilA Vibrio cholerae strain A1552

37.226

97.163

0.362
  pilA Vibrio cholerae C6706

37.226

97.163

0.362
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

37.226

97.163

0.362

Multiple sequence alignment