Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACL0K2_RS08790 Genome accession   NZ_CP178378
Coordinates   1958483..1959700 (-) Length   405 a.a.
NCBI ID   WP_413044242.1    Uniprot ID   -
Organism   Pseudomonas sp. YJ42     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1953483..1964700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL0K2_RS08760 (ACL0K2_08760) rplM 1953729..1954157 (-) 429 WP_019342644.1 50S ribosomal protein L13 -
  ACL0K2_RS08765 (ACL0K2_08765) - 1954542..1955579 (+) 1038 WP_045163479.1 NADP(H)-dependent aldo-keto reductase -
  ACL0K2_RS08770 (ACL0K2_08770) - 1955686..1956378 (+) 693 WP_045163480.1 energy-coupling factor ABC transporter permease -
  ACL0K2_RS08775 (ACL0K2_08775) yacG 1956435..1956632 (-) 198 WP_045163481.1 DNA gyrase inhibitor YacG -
  ACL0K2_RS08780 (ACL0K2_08780) coaE 1956629..1957237 (-) 609 WP_045163482.1 dephospho-CoA kinase -
  ACL0K2_RS08785 (ACL0K2_08785) pilD 1957614..1958480 (-) 867 WP_413044241.1 prepilin peptidase Machinery gene
  ACL0K2_RS08790 (ACL0K2_08790) pilC 1958483..1959700 (-) 1218 WP_413044242.1 type II secretion system F family protein Machinery gene
  ACL0K2_RS08795 (ACL0K2_08795) pilB 1959702..1961405 (-) 1704 WP_413044243.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACL0K2_RS08800 (ACL0K2_08800) pilA/pilAI 1961632..1962051 (+) 420 WP_255983138.1 pilin Machinery gene
  ACL0K2_RS08805 (ACL0K2_08805) pilA/pilAII 1962120..1962545 (+) 426 WP_413044244.1 pilin Regulator
  ACL0K2_RS08810 (ACL0K2_08810) - 1962571..1963962 (+) 1392 WP_413044245.1 O-antigen ligase family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44202.93 Da        Isoelectric Point: 9.8103

>NTDB_id=1089229 ACL0K2_RS08790 WP_413044242.1 1958483..1959700(-) (pilC) [Pseudomonas sp. YJ42]
MAQKAIKTSVFVWEGTNKQGAKIKGELSGVSPALVKAQLRKQGVNPQKVRKKSVSFFSAGKKIKPMDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPNMRKLVDDLKQEVAAGNSFATALRKKPQYFDDLYCNLVDSGEQSGSLDTLLDRVATYKEKT
EALKAKIKKAMNYPVAVVLVAIIVSAILLIKVVPQFQDVFANFGAELPAFTLMVIGLSEMLQEWWYFLLFGLFGAAYAFK
AAHSKSERFRNWFDRVLLKVPVVGDILYKSAVARFARTLATTFAAGVPLVDALDSVAGATGNVVFRNATMKVKSDVSSGM
QLNFSMRTTGTFPSMAIQMTAIGEESGSLDEMLAKVATFYEDEVDNMVDGLTALMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGSVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1089229 ACL0K2_RS08790 WP_413044242.1 1958483..1959700(-) (pilC) [Pseudomonas sp. YJ42]
ATGGCGCAGAAAGCGATAAAAACCAGTGTATTCGTCTGGGAAGGCACCAACAAACAGGGAGCGAAGATCAAGGGGGAGCT
GAGCGGCGTGAGCCCCGCCTTGGTCAAAGCGCAACTGCGCAAGCAGGGTGTCAATCCTCAGAAGGTGCGTAAGAAGTCGG
TGTCGTTCTTCAGCGCTGGCAAAAAAATCAAGCCGATGGACATCGCCTTGTTCACGCGTCAAATGGCGACAATGATGAAA
GCCGGTGTTCCGCTGTTGCAATCGTTCGACATCATCGGGGAGGGTTTTGATAACCCGAACATGCGTAAGCTCGTGGACGA
TCTCAAGCAGGAAGTCGCCGCGGGTAACAGCTTTGCCACGGCACTGCGTAAGAAGCCCCAGTACTTCGATGATCTCTATT
GCAACCTGGTCGATTCGGGCGAACAGTCAGGCTCATTGGATACTCTTTTGGACCGGGTCGCGACCTACAAGGAAAAAACC
GAGGCGCTGAAAGCAAAGATTAAGAAGGCCATGAACTACCCCGTTGCGGTCGTGCTGGTGGCTATCATTGTTTCGGCGAT
CCTCTTGATCAAGGTTGTCCCGCAATTTCAAGATGTGTTCGCAAACTTCGGTGCGGAGCTGCCAGCGTTTACCTTGATGG
TCATTGGGCTGTCAGAGATGCTGCAAGAGTGGTGGTATTTTCTGCTATTTGGCTTGTTTGGTGCTGCCTATGCCTTCAAG
GCGGCGCACAGTAAATCTGAGCGGTTCCGAAACTGGTTCGATCGAGTTTTACTGAAGGTCCCGGTAGTCGGCGATATCCT
GTACAAGTCGGCGGTAGCGCGCTTCGCTCGTACGTTGGCAACAACCTTTGCCGCCGGTGTGCCGTTGGTCGATGCACTGG
ATTCGGTCGCGGGTGCAACCGGTAACGTGGTTTTCCGCAACGCCACGATGAAGGTCAAGAGCGATGTTTCCAGCGGTATG
CAGCTTAACTTCTCGATGCGTACGACCGGTACGTTTCCAAGTATGGCCATCCAGATGACGGCTATTGGCGAAGAGTCTGG
CTCGCTGGATGAAATGCTGGCCAAGGTGGCAACATTTTACGAAGACGAAGTCGACAATATGGTTGATGGGCTAACAGCTC
TAATGGAGCCGATGATCATGGCGGTTTTGGGTGTGCTAGTAGGTGGTTTGATCATCGCGATGTACCTGCCAATCTTCCAG
TTGGGCTCTGTAGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

91.111

100

0.911
  pilC Acinetobacter baylyi ADP1

59.113

100

0.593
  pilC Acinetobacter baumannii D1279779

58.765

100

0.588
  pilC Legionella pneumophila strain ERS1305867

53.788

97.778

0.526
  pilG Neisseria gonorrhoeae MS11

44.527

99.259

0.442
  pilG Neisseria meningitidis 44/76-A

44.527

99.259

0.442
  pilC Vibrio cholerae strain A1552

42.677

97.778

0.417
  pilC Vibrio campbellii strain DS40M4

41.919

97.778

0.41
  pilC Thermus thermophilus HB27

36.591

98.519

0.36

Multiple sequence alignment