Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   ACF1RT_RS01125 Genome accession   NZ_CP172847
Coordinates   230982..231296 (+) Length   104 a.a.
NCBI ID   WP_002263437.1    Uniprot ID   -
Organism   Streptococcus mutans strain DPC6143     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 225982..236296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF1RT_RS01110 (ACF1RT_01110) - 228561..228944 (+) 384 WP_002264248.1 DUF1033 family protein -
  ACF1RT_RS01115 (ACF1RT_01115) comYA 229074..230015 (+) 942 WP_002263435.1 competence type IV pilus ATPase ComGA Machinery gene
  ACF1RT_RS01120 (ACF1RT_01120) comYB 229951..230982 (+) 1032 WP_255262788.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACF1RT_RS01125 (ACF1RT_01125) comYC 230982..231296 (+) 315 WP_002263437.1 competence type IV pilus major pilin ComGC Machinery gene
  ACF1RT_RS01130 (ACF1RT_01130) comYD 231283..231687 (+) 405 WP_002263438.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACF1RT_RS01135 (ACF1RT_01135) comYE 231659..231952 (+) 294 WP_002263439.1 competence type IV pilus minor pilin ComGE Machinery gene
  ACF1RT_RS01140 (ACF1RT_01140) comYF 231939..232373 (+) 435 WP_002263440.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACF1RT_RS01145 (ACF1RT_01145) comYG 232351..232740 (+) 390 WP_226711279.1 competence type IV pilus minor pilin ComGG Machinery gene
  ACF1RT_RS01150 (ACF1RT_01150) comYH 232795..233748 (+) 954 WP_002269808.1 class I SAM-dependent methyltransferase Machinery gene
  ACF1RT_RS01155 (ACF1RT_01155) - 233807..235006 (+) 1200 WP_002263443.1 acetate kinase -
  ACF1RT_RS01160 (ACF1RT_01160) tnpA 235219..235682 (+) 464 Protein_203 IS200/IS605 family transposase -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 11591.60 Da        Isoelectric Point: 10.2206

>NTDB_id=1069058 ACF1RT_RS01125 WP_002263437.1 230982..231296(+) (comYC) [Streptococcus mutans strain DPC6143]
MKKIKRVSVRAFTLIEMLVVLLIISILLLLFVPNLTKQKDKVKDTGGSAVVKVVESQAELYELNKTDSATLSKLVASGDI
TQEQANSYKDYYAKHPSKTRHVAN

Nucleotide


Download         Length: 315 bp        

>NTDB_id=1069058 ACF1RT_RS01125 WP_002263437.1 230982..231296(+) (comYC) [Streptococcus mutans strain DPC6143]
ATGAAAAAGATCAAGAGAGTCAGTGTACGGGCTTTTACGCTTATAGAAATGTTAGTAGTTCTTCTCATTATTAGTATTCT
TTTACTATTATTTGTTCCTAATTTAACTAAGCAAAAAGATAAGGTAAAAGATACTGGCGGTTCTGCCGTGGTTAAAGTTG
TAGAAAGTCAGGCTGAGCTTTATGAGCTTAATAAAACCGATTCTGCTACTCTTTCTAAATTAGTAGCTAGTGGTGATATT
ACACAAGAACAGGCAAATTCATACAAGGATTACTATGCAAAACACCCAAGTAAAACACGGCATGTCGCGAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus mutans UA140

100

100

1
  comYC Streptococcus mutans UA159

100

100

1
  comYC Streptococcus gordonii str. Challis substr. CH1

71.429

100

0.721
  comGC/cglC Streptococcus mitis SK321

66.667

95.192

0.635
  comGC/cglC Streptococcus mitis NCTC 12261

69.565

88.462

0.615
  comGC/cglC Streptococcus pneumoniae R6

63.636

95.192

0.606
  comGC/cglC Streptococcus pneumoniae Rx1

63.636

95.192

0.606
  comGC/cglC Streptococcus pneumoniae D39

63.636

95.192

0.606
  comGC/cglC Streptococcus pneumoniae TIGR4

63.636

95.192

0.606
  comGC Lactococcus lactis subsp. cremoris KW2

55.446

97.115

0.538
  comYC Streptococcus suis isolate S10

60.227

84.615

0.51

Multiple sequence alignment