Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYG   Type   Machinery gene
Locus tag   ACF1RT_RS01145 Genome accession   NZ_CP172847
Coordinates   232351..232740 (+) Length   129 a.a.
NCBI ID   WP_226711279.1    Uniprot ID   -
Organism   Streptococcus mutans strain DPC6143     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 227351..237740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF1RT_RS01110 (ACF1RT_01110) - 228561..228944 (+) 384 WP_002264248.1 DUF1033 family protein -
  ACF1RT_RS01115 (ACF1RT_01115) comYA 229074..230015 (+) 942 WP_002263435.1 competence type IV pilus ATPase ComGA Machinery gene
  ACF1RT_RS01120 (ACF1RT_01120) comYB 229951..230982 (+) 1032 WP_255262788.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACF1RT_RS01125 (ACF1RT_01125) comYC 230982..231296 (+) 315 WP_002263437.1 competence type IV pilus major pilin ComGC Machinery gene
  ACF1RT_RS01130 (ACF1RT_01130) comYD 231283..231687 (+) 405 WP_002263438.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACF1RT_RS01135 (ACF1RT_01135) comYE 231659..231952 (+) 294 WP_002263439.1 competence type IV pilus minor pilin ComGE Machinery gene
  ACF1RT_RS01140 (ACF1RT_01140) comYF 231939..232373 (+) 435 WP_002263440.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACF1RT_RS01145 (ACF1RT_01145) comYG 232351..232740 (+) 390 WP_226711279.1 competence type IV pilus minor pilin ComGG Machinery gene
  ACF1RT_RS01150 (ACF1RT_01150) comYH 232795..233748 (+) 954 WP_002269808.1 class I SAM-dependent methyltransferase Machinery gene
  ACF1RT_RS01155 (ACF1RT_01155) - 233807..235006 (+) 1200 WP_002263443.1 acetate kinase -
  ACF1RT_RS01160 (ACF1RT_01160) tnpA 235219..235682 (+) 464 Protein_203 IS200/IS605 family transposase -
  ACF1RT_RS01165 (ACF1RT_01165) - 236310..236555 (+) 246 WP_002263444.1 helix-turn-helix transcriptional regulator -
  ACF1RT_RS01170 (ACF1RT_01170) - 236524..236964 (+) 441 WP_002264006.1 hypothetical protein -
  ACF1RT_RS01175 (ACF1RT_01175) - 237017..237679 (+) 663 WP_002263446.1 type II CAAX endopeptidase family protein -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14966.33 Da        Isoelectric Point: 10.2940

>NTDB_id=1069062 ACF1RT_RS01145 WP_226711279.1 232351..232740(+) (comYG) [Streptococcus mutans strain DPC6143]
MLFMKKIKAGVLLYALFMSAIFSLFLQFYLNRVVATERQNQAQLSASKAYLIADLTQDLAKDNFGQLIFNHGRSSYHKQE
GELLIKVHLTDGQSYQYRFNCVTENKEKGKFSVANKTFTKSIEKRHFQK

Nucleotide


Download         Length: 390 bp        

>NTDB_id=1069062 ACF1RT_RS01145 WP_226711279.1 232351..232740(+) (comYG) [Streptococcus mutans strain DPC6143]
ATGCTTTTCATGAAAAAAATTAAAGCAGGCGTACTTCTATATGCTCTGTTTATGTCAGCAATCTTTAGTCTTTTCTTACA
ATTTTATCTTAATCGTGTTGTAGCAACAGAGAGACAAAATCAGGCACAATTATCGGCCAGTAAAGCTTATCTTATAGCAG
ATCTAACTCAAGATTTGGCTAAAGACAACTTTGGGCAGTTGATTTTTAATCACGGAAGGTCTAGTTATCATAAACAGGAG
GGGGAACTTCTGATAAAAGTCCATTTGACAGATGGTCAGTCCTACCAATATCGTTTTAACTGTGTAACAGAAAATAAGGA
AAAAGGAAAATTTAGTGTGGCTAATAAAACTTTTACTAAATCTATAGAAAAACGTCATTTTCAAAAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYG Streptococcus mutans UA140

99.225

100

0.992
  comYG Streptococcus mutans UA159

99.225

100

0.992

Multiple sequence alignment