Detailed information NTG1069059

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: ACF1RT_RS01130
• Genome accession: NZ_CP172847
• Coordinates: 231283..231687 (+)
• Length: 134 a.a.
• NCBI ID: WP_002263438.1
• Uniprot ID: -
• Organism: Streptococcus mutans strain DPC6143
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 226283..236687

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACF1RT_RS01110 (ACF1RT_01110)	-	228561..228944 (+)	384	WP_002264248.1	DUF1033 family protein	-
ACF1RT_RS01115 (ACF1RT_01115)	comYA	229074..230015 (+)	942	WP_002263435.1	competence type IV pilus ATPase ComGA	Machinery gene
ACF1RT_RS01120 (ACF1RT_01120)	comYB	229951..230982 (+)	1032	WP_255262788.1	competence type IV pilus assembly protein ComGB	Machinery gene
ACF1RT_RS01125 (ACF1RT_01125)	comYC	230982..231296 (+)	315	WP_002263437.1	competence type IV pilus major pilin ComGC	Machinery gene
ACF1RT_RS01130 (ACF1RT_01130)	comYD	231283..231687 (+)	405	WP_002263438.1	competence type IV pilus minor pilin ComGD	Machinery gene
ACF1RT_RS01135 (ACF1RT_01135)	comYE	231659..231952 (+)	294	WP_002263439.1	competence type IV pilus minor pilin ComGE	Machinery gene
ACF1RT_RS01140 (ACF1RT_01140)	comYF	231939..232373 (+)	435	WP_002263440.1	competence type IV pilus minor pilin ComGF	Machinery gene
ACF1RT_RS01145 (ACF1RT_01145)	comYG	232351..232740 (+)	390	WP_226711279.1	competence type IV pilus minor pilin ComGG	Machinery gene
ACF1RT_RS01150 (ACF1RT_01150)	comYH	232795..233748 (+)	954	WP_002269808.1	class I SAM-dependent methyltransferase	Machinery gene
ACF1RT_RS01155 (ACF1RT_01155)	-	233807..235006 (+)	1200	WP_002263443.1	acetate kinase	-
ACF1RT_RS01160 (ACF1RT_01160)	tnpA	235219..235682 (+)	464	Protein_203	IS200/IS605 family transposase	-
ACF1RT_RS01165 (ACF1RT_01165)	-	236310..236555 (+)	246	WP_002263444.1	helix-turn-helix transcriptional regulator	-

Sequence

Protein

• Length: 134 a.a.
• Molecular weight: 15444.77 Da
• Isoelectric Point: 9.5619

>NTDB_id=1069059 ACF1RT_RS01130 WP_002263438.1 231283..231687(+) (comYD) [Streptococcus mutans strain DPC6143]
MSRIKAFTLIESLVTLAITSFLILSFSGSITQTFAKVEERLFFLSFEHLYRDTQKLSVYQRQDMTLILKSEYISNGVEVL
KIPKDVKLERNKTLHFDQAGGNSSLEKLVFQTSDEKRVTYQLYIGSGQYKKTES

Nucleotide

• Length: 405 bp

>NTDB_id=1069059 ACF1RT_RS01130 WP_002263438.1 231283..231687(+) (comYD) [Streptococcus mutans strain DPC6143]
ATGTCGCGAATTAAAGCTTTTACGCTTATAGAAAGTTTAGTGACTTTAGCAATTACTAGTTTTTTGATTTTAAGCTTTTC
AGGTAGTATAACTCAAACGTTTGCCAAAGTAGAAGAGCGTCTCTTTTTTCTTTCTTTTGAACATCTTTACCGTGACACGC
AAAAACTTAGTGTTTATCAAAGACAAGATATGACTTTAATATTAAAAAGCGAATATATATCAAATGGTGTTGAAGTACTT
AAAATCCCTAAGGATGTCAAACTAGAGAGGAATAAAACTTTGCACTTTGATCAGGCAGGAGGAAATTCTTCTTTAGAAAA
ACTTGTTTTTCAAACATCTGATGAAAAAAGAGTTACTTATCAATTATATATAGGAAGTGGTCAGTATAAAAAAACAGAAA
GTTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (1-25)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	100	100	1
comYD	Streptococcus mutans UA159	100	100	1
comYD	Streptococcus gordonii str. Challis substr. CH1	50.388	96.269	0.485
comGD/cglD	Streptococcus mitis NCTC 12261	49.612	96.269	0.478
comGD/cglD	Streptococcus pneumoniae Rx1	49.219	95.522	0.47
comGD/cglD	Streptococcus pneumoniae D39	49.219	95.522	0.47
comGD/cglD	Streptococcus pneumoniae R6	49.219	95.522	0.47
comGD/cglD	Streptococcus pneumoniae TIGR4	48.438	95.522	0.463
comGD/cglD	Streptococcus mitis SK321	48.438	95.522	0.463
comGD	Lactococcus lactis subsp. cremoris KW2	39.394	98.507	0.388