Detailed information
Bioinformatically predicted
Overview
| Name | comYA | Type | Machinery gene |
| Locus tag | ACF1RT_RS01115 | Genome accession | NZ_CP172847 |
| Coordinates | 229074..230015 (+) | Length | 313 a.a. |
| NCBI ID | WP_002263435.1 | Uniprot ID | - |
| Organism | Streptococcus mutans strain DPC6143 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 224074..235015
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACF1RT_RS01105 (ACF1RT_01105) | rpoC | 224805..228434 (+) | 3630 | WP_002263433.1 | DNA-directed RNA polymerase subunit beta' | - |
| ACF1RT_RS01110 (ACF1RT_01110) | - | 228561..228944 (+) | 384 | WP_002264248.1 | DUF1033 family protein | - |
| ACF1RT_RS01115 (ACF1RT_01115) | comYA | 229074..230015 (+) | 942 | WP_002263435.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| ACF1RT_RS01120 (ACF1RT_01120) | comYB | 229951..230982 (+) | 1032 | WP_255262788.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| ACF1RT_RS01125 (ACF1RT_01125) | comYC | 230982..231296 (+) | 315 | WP_002263437.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ACF1RT_RS01130 (ACF1RT_01130) | comYD | 231283..231687 (+) | 405 | WP_002263438.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| ACF1RT_RS01135 (ACF1RT_01135) | comYE | 231659..231952 (+) | 294 | WP_002263439.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| ACF1RT_RS01140 (ACF1RT_01140) | comYF | 231939..232373 (+) | 435 | WP_002263440.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| ACF1RT_RS01145 (ACF1RT_01145) | comYG | 232351..232740 (+) | 390 | WP_226711279.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| ACF1RT_RS01150 (ACF1RT_01150) | comYH | 232795..233748 (+) | 954 | WP_002269808.1 | class I SAM-dependent methyltransferase | Machinery gene |
| ACF1RT_RS01155 (ACF1RT_01155) | - | 233807..235006 (+) | 1200 | WP_002263443.1 | acetate kinase | - |
Sequence
Protein
Download Length: 313 a.a. Molecular weight: 35739.09 Da Isoelectric Point: 8.0347
>NTDB_id=1069056 ACF1RT_RS01115 WP_002263435.1 229074..230015(+) (comYA) [Streptococcus mutans strain DPC6143]
MVQKLGRKIIAEAVQNKAQDIYIIPKKESYELYMRIGNERRFIDVYDHHFMANLISHFKFVAGMNVGEKRRSQLGSCDYS
YDEGKVISLRLSSVGDYRGYESLVIRLLFSGRHDLKFWFNSMDLILNEIKGRGLYLFSGPVGSGKTSLMYQLVKLRFETK
QVITIEDPVEIKQDNMLQLQLNESIDMTYDNLIKLSLRHRPDILIIGEIRDKETARAVIRASLTGAMVFSTIHAKSIPGV
YARMLELGTSSEELQNALRGIVYQRLIGGGGIIDFAKGDYQNHSAKKWNKQIYDLFTAGYITEGEAQAEEIED
MVQKLGRKIIAEAVQNKAQDIYIIPKKESYELYMRIGNERRFIDVYDHHFMANLISHFKFVAGMNVGEKRRSQLGSCDYS
YDEGKVISLRLSSVGDYRGYESLVIRLLFSGRHDLKFWFNSMDLILNEIKGRGLYLFSGPVGSGKTSLMYQLVKLRFETK
QVITIEDPVEIKQDNMLQLQLNESIDMTYDNLIKLSLRHRPDILIIGEIRDKETARAVIRASLTGAMVFSTIHAKSIPGV
YARMLELGTSSEELQNALRGIVYQRLIGGGGIIDFAKGDYQNHSAKKWNKQIYDLFTAGYITEGEAQAEEIED
Nucleotide
Download Length: 942 bp
>NTDB_id=1069056 ACF1RT_RS01115 WP_002263435.1 229074..230015(+) (comYA) [Streptococcus mutans strain DPC6143]
ATGGTTCAAAAATTAGGTAGAAAAATCATTGCCGAAGCTGTTCAAAATAAAGCACAAGATATCTATATTATTCCTAAAAA
AGAATCTTATGAGCTTTATATGAGAATAGGGAATGAAAGGAGGTTCATTGATGTTTATGACCATCATTTCATGGCTAATC
TTATTAGTCACTTTAAATTTGTTGCAGGAATGAATGTTGGTGAGAAAAGACGAAGTCAGCTGGGCTCTTGTGATTATTCT
TATGATGAAGGGAAAGTTATTTCATTAAGGTTATCAAGTGTAGGAGATTATCGTGGTTATGAAAGTTTGGTTATTCGCTT
ACTTTTTTCTGGACGTCACGATTTAAAATTCTGGTTTAACAGTATGGATTTGATTTTAAATGAAATCAAGGGGCGAGGGC
TTTATCTTTTTTCAGGTCCAGTTGGAAGTGGCAAAACAAGTTTGATGTATCAATTGGTAAAACTAAGATTTGAGACCAAA
CAGGTAATTACCATTGAAGATCCTGTGGAAATTAAGCAAGATAATATGTTACAACTGCAGCTTAATGAAAGCATTGATAT
GACTTATGATAATTTAATTAAATTATCTCTGAGGCATCGTCCGGATATTTTAATTATTGGAGAAATTCGAGATAAAGAAA
CCGCCAGAGCTGTTATTAGAGCAAGTCTTACAGGGGCAATGGTATTCTCAACTATCCATGCTAAAAGCATTCCAGGTGTT
TATGCTAGGATGTTAGAATTGGGTACTAGTTCAGAAGAATTACAAAATGCTTTGCGTGGTATTGTTTATCAACGTTTAAT
AGGGGGAGGAGGGATTATTGACTTTGCCAAAGGGGATTATCAAAACCACTCAGCAAAAAAGTGGAACAAACAAATTTATG
ATCTTTTTACAGCAGGATATATCACTGAAGGAGAAGCACAAGCAGAAGAAATTGAAGATTAA
ATGGTTCAAAAATTAGGTAGAAAAATCATTGCCGAAGCTGTTCAAAATAAAGCACAAGATATCTATATTATTCCTAAAAA
AGAATCTTATGAGCTTTATATGAGAATAGGGAATGAAAGGAGGTTCATTGATGTTTATGACCATCATTTCATGGCTAATC
TTATTAGTCACTTTAAATTTGTTGCAGGAATGAATGTTGGTGAGAAAAGACGAAGTCAGCTGGGCTCTTGTGATTATTCT
TATGATGAAGGGAAAGTTATTTCATTAAGGTTATCAAGTGTAGGAGATTATCGTGGTTATGAAAGTTTGGTTATTCGCTT
ACTTTTTTCTGGACGTCACGATTTAAAATTCTGGTTTAACAGTATGGATTTGATTTTAAATGAAATCAAGGGGCGAGGGC
TTTATCTTTTTTCAGGTCCAGTTGGAAGTGGCAAAACAAGTTTGATGTATCAATTGGTAAAACTAAGATTTGAGACCAAA
CAGGTAATTACCATTGAAGATCCTGTGGAAATTAAGCAAGATAATATGTTACAACTGCAGCTTAATGAAAGCATTGATAT
GACTTATGATAATTTAATTAAATTATCTCTGAGGCATCGTCCGGATATTTTAATTATTGGAGAAATTCGAGATAAAGAAA
CCGCCAGAGCTGTTATTAGAGCAAGTCTTACAGGGGCAATGGTATTCTCAACTATCCATGCTAAAAGCATTCCAGGTGTT
TATGCTAGGATGTTAGAATTGGGTACTAGTTCAGAAGAATTACAAAATGCTTTGCGTGGTATTGTTTATCAACGTTTAAT
AGGGGGAGGAGGGATTATTGACTTTGCCAAAGGGGATTATCAAAACCACTCAGCAAAAAAGTGGAACAAACAAATTTATG
ATCTTTTTACAGCAGGATATATCACTGAAGGAGAAGCACAAGCAGAAGAAATTGAAGATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYA | Streptococcus mutans UA159 |
100 |
100 |
1 |
| comYA | Streptococcus mutans UA140 |
99.681 |
100 |
0.997 |
| comYA | Streptococcus gordonii str. Challis substr. CH1 |
67.093 |
100 |
0.671 |
| comGA/cglA | Streptococcus sobrinus strain NIDR 6715-7 |
66.026 |
99.681 |
0.658 |
| comGA/cglA/cilD | Streptococcus pneumoniae TIGR4 |
65.916 |
99.361 |
0.655 |
| comGA/cglA/cilD | Streptococcus pneumoniae Rx1 |
65.916 |
99.361 |
0.655 |
| comGA/cglA/cilD | Streptococcus mitis NCTC 12261 |
65.916 |
99.361 |
0.655 |
| comGA/cglA/cilD | Streptococcus pneumoniae D39 |
65.916 |
99.361 |
0.655 |
| comGA/cglA/cilD | Streptococcus pneumoniae R6 |
65.916 |
99.361 |
0.655 |
| comGA | Lactococcus lactis subsp. cremoris KW2 |
52.412 |
99.361 |
0.521 |