Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | ACFFRD_RS20915 | Genome accession | NZ_CP171148 |
| Coordinates | 3591296..3592423 (+) | Length | 375 a.a. |
| NCBI ID | WP_392477153.1 | Uniprot ID | - |
| Organism | Nostoc sp. C110 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3586296..3597423
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACFFRD_RS20900 | grpE | 3587967..3588716 (-) | 750 | WP_114080203.1 | nucleotide exchange factor GrpE | - |
| ACFFRD_RS20905 | - | 3588853..3588984 (+) | 132 | WP_392477150.1 | hypothetical protein | - |
| ACFFRD_RS20910 | pilB/pilB1 | 3589175..3591181 (+) | 2007 | WP_392477152.1 | GspE/PulE family protein | Machinery gene |
| ACFFRD_RS20915 | pilT | 3591296..3592423 (+) | 1128 | WP_392477153.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| ACFFRD_RS20920 | - | 3592528..3593751 (+) | 1224 | WP_179071231.1 | type II secretion system F family protein | - |
| ACFFRD_RS20925 | - | 3593880..3594440 (+) | 561 | WP_114080207.1 | hypothetical protein | - |
| ACFFRD_RS20930 | - | 3594567..3595571 (-) | 1005 | WP_114080208.1 | saccharopine dehydrogenase-like oxidoreductase | - |
| ACFFRD_RS20935 | - | 3596337..3596546 (+) | 210 | WP_114080209.1 | DUF2997 domain-containing protein | - |
| ACFFRD_RS20940 | - | 3596586..3596972 (+) | 387 | WP_012406942.1 | DUF1257 domain-containing protein | - |
Sequence
Protein
Download Length: 375 a.a. Molecular weight: 41028.22 Da Isoelectric Point: 7.4775
>NTDB_id=1060302 ACFFRD_RS20915 WP_392477153.1 3591296..3592423(+) (pilT) [Nostoc sp. C110]
MEMMIEDLMEQLIELGGSDMHLSAGLPPYFRISGKLTPIGEHVLTADQCQRLIFSMLNNTQRKTLEQNWELDCSYGVKGL
ARFRVNVYKERGSYAACLRALSSKIPNFEKLGLPDIVREMTDKPRGLILVTGPTGSGKTTTLAAMIDLINRTKAEHILTV
EDPIEFVYEPIKSLVHQRQLGEDTKSFANALKAALREDPDIVLVGEMRDLETISLAISAAETGHLVFGTLHTSSAAQTVD
RIIDVFPHERQTQVRVQLSNSLVAVFSQTLVSKKNPKPGEYGRVMAQEILIVTPAISNLIREGKTSQIYSAIQTGGKLGM
QTLEKVLADFYKSGTISFEAAMSKTSKPDEIQRLIGNSTPQAGAGAKSGAAAKAH
MEMMIEDLMEQLIELGGSDMHLSAGLPPYFRISGKLTPIGEHVLTADQCQRLIFSMLNNTQRKTLEQNWELDCSYGVKGL
ARFRVNVYKERGSYAACLRALSSKIPNFEKLGLPDIVREMTDKPRGLILVTGPTGSGKTTTLAAMIDLINRTKAEHILTV
EDPIEFVYEPIKSLVHQRQLGEDTKSFANALKAALREDPDIVLVGEMRDLETISLAISAAETGHLVFGTLHTSSAAQTVD
RIIDVFPHERQTQVRVQLSNSLVAVFSQTLVSKKNPKPGEYGRVMAQEILIVTPAISNLIREGKTSQIYSAIQTGGKLGM
QTLEKVLADFYKSGTISFEAAMSKTSKPDEIQRLIGNSTPQAGAGAKSGAAAKAH
Nucleotide
Download Length: 1128 bp
>NTDB_id=1060302 ACFFRD_RS20915 WP_392477153.1 3591296..3592423(+) (pilT) [Nostoc sp. C110]
ATGGAAATGATGATTGAAGATTTGATGGAACAGTTGATTGAACTGGGTGGCTCGGATATGCATTTATCCGCAGGTTTGCC
TCCCTACTTCCGCATCAGTGGCAAACTCACTCCCATCGGTGAGCATGTATTGACAGCCGATCAATGTCAAAGGCTGATTT
TTAGTATGCTCAACAACACTCAGCGTAAAACCTTAGAGCAAAACTGGGAACTGGATTGTTCTTATGGTGTTAAAGGTTTG
GCACGTTTCCGGGTCAATGTTTATAAAGAACGTGGTTCTTATGCTGCTTGCTTACGGGCATTAAGTTCTAAGATTCCTAA
CTTTGAAAAATTAGGTCTGCCAGATATCGTAAGGGAAATGACAGATAAGCCCAGAGGACTGATTCTGGTGACAGGGCCTA
CTGGTTCCGGGAAGACAACTACCCTAGCAGCGATGATCGACTTGATTAACCGCACTAAAGCAGAGCATATTTTAACGGTG
GAAGACCCAATTGAATTTGTCTACGAACCAATTAAAAGCTTGGTTCACCAACGACAACTGGGTGAAGATACTAAGAGCTT
TGCTAACGCTTTGAAAGCAGCTTTGCGGGAAGATCCAGATATTGTTCTGGTGGGAGAAATGCGCGATTTGGAAACGATTT
CTTTGGCGATTTCCGCAGCAGAAACAGGACACTTGGTATTTGGTACTCTGCACACCAGTTCTGCCGCCCAGACAGTTGAC
CGGATTATTGACGTTTTCCCCCATGAAAGACAAACCCAGGTGCGGGTGCAGTTATCTAACTCGTTAGTGGCAGTATTTAG
CCAAACGTTGGTGTCCAAGAAAAACCCGAAACCTGGTGAATATGGTCGGGTGATGGCTCAAGAAATTCTGATTGTCACTC
CTGCTATTTCCAACTTGATTCGAGAAGGCAAAACATCTCAAATTTACTCAGCTATTCAAACTGGCGGCAAATTGGGGATG
CAAACTCTGGAGAAAGTTTTAGCTGATTTTTACAAATCAGGAACGATTTCCTTTGAAGCCGCGATGTCTAAAACTTCTAA
GCCAGATGAAATCCAACGTCTCATCGGGAATTCTACACCGCAAGCAGGCGCAGGTGCAAAATCCGGTGCGGCTGCCAAAG
CGCATTAA
ATGGAAATGATGATTGAAGATTTGATGGAACAGTTGATTGAACTGGGTGGCTCGGATATGCATTTATCCGCAGGTTTGCC
TCCCTACTTCCGCATCAGTGGCAAACTCACTCCCATCGGTGAGCATGTATTGACAGCCGATCAATGTCAAAGGCTGATTT
TTAGTATGCTCAACAACACTCAGCGTAAAACCTTAGAGCAAAACTGGGAACTGGATTGTTCTTATGGTGTTAAAGGTTTG
GCACGTTTCCGGGTCAATGTTTATAAAGAACGTGGTTCTTATGCTGCTTGCTTACGGGCATTAAGTTCTAAGATTCCTAA
CTTTGAAAAATTAGGTCTGCCAGATATCGTAAGGGAAATGACAGATAAGCCCAGAGGACTGATTCTGGTGACAGGGCCTA
CTGGTTCCGGGAAGACAACTACCCTAGCAGCGATGATCGACTTGATTAACCGCACTAAAGCAGAGCATATTTTAACGGTG
GAAGACCCAATTGAATTTGTCTACGAACCAATTAAAAGCTTGGTTCACCAACGACAACTGGGTGAAGATACTAAGAGCTT
TGCTAACGCTTTGAAAGCAGCTTTGCGGGAAGATCCAGATATTGTTCTGGTGGGAGAAATGCGCGATTTGGAAACGATTT
CTTTGGCGATTTCCGCAGCAGAAACAGGACACTTGGTATTTGGTACTCTGCACACCAGTTCTGCCGCCCAGACAGTTGAC
CGGATTATTGACGTTTTCCCCCATGAAAGACAAACCCAGGTGCGGGTGCAGTTATCTAACTCGTTAGTGGCAGTATTTAG
CCAAACGTTGGTGTCCAAGAAAAACCCGAAACCTGGTGAATATGGTCGGGTGATGGCTCAAGAAATTCTGATTGTCACTC
CTGCTATTTCCAACTTGATTCGAGAAGGCAAAACATCTCAAATTTACTCAGCTATTCAAACTGGCGGCAAATTGGGGATG
CAAACTCTGGAGAAAGTTTTAGCTGATTTTTACAAATCAGGAACGATTTCCTTTGAAGCCGCGATGTCTAAAACTTCTAA
GCCAGATGAAATCCAACGTCTCATCGGGAATTCTACACCGCAAGCAGGCGCAGGTGCAAAATCCGGTGCGGCTGCCAAAG
CGCATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas aeruginosa PAK |
54.467 |
92.533 |
0.504 |
| pilT | Pseudomonas stutzeri DSM 10701 |
53.868 |
93.067 |
0.501 |
| pilT | Legionella pneumophila strain ERS1305867 |
52.738 |
92.533 |
0.488 |
| pilT | Acinetobacter baylyi ADP1 |
52.738 |
92.533 |
0.488 |
| pilT | Legionella pneumophila strain Lp02 |
52.738 |
92.533 |
0.488 |
| pilT | Acinetobacter nosocomialis M2 |
51.873 |
92.533 |
0.48 |
| pilT | Acinetobacter baumannii D1279779 |
51.873 |
92.533 |
0.48 |
| pilT | Acinetobacter baumannii strain A118 |
51.873 |
92.533 |
0.48 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
47.411 |
97.867 |
0.464 |
| pilT | Neisseria gonorrhoeae MS11 |
50.737 |
90.4 |
0.459 |
| pilT | Neisseria meningitidis 8013 |
50.442 |
90.4 |
0.456 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
49.415 |
91.2 |
0.451 |
| pilT | Vibrio cholerae strain A1552 |
49.415 |
91.2 |
0.451 |