Detailed information NTG1059232

Bioinformatically predicted

Overview

• Name: comYC
• Type: Machinery gene
• Locus tag: ACFKHJ_RS09900
• Genome accession: NZ_CP170759
• Coordinates: 1912819..1913103 (-)
• Length: 94 a.a.
• NCBI ID: WP_277940772.1
• Uniprot ID: -
• Organism: Streptococcus parasuis strain FZ1
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1907819..1918103

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFKHJ_RS09865	-	1908251..1908802 (-)	552	WP_216806342.1	folate family ECF transporter S component	-
ACFKHJ_RS09870	-	1909057..1910244 (-)	1188	WP_392452623.1	acetate kinase	-
ACFKHJ_RS09875	comYH	1910294..1911247 (-)	954	WP_392452625.1	class I SAM-dependent methyltransferase	Machinery gene
ACFKHJ_RS09880	comGG	1911267..1911767 (-)	501	WP_171989710.1	competence type IV pilus minor pilin ComGG	-
ACFKHJ_RS09885	comYF	1911745..1912179 (-)	435	WP_392452627.1	competence type IV pilus minor pilin ComGF	Machinery gene
ACFKHJ_RS09890	comGE	1912166..1912459 (-)	294	WP_392452628.1	competence type IV pilus minor pilin ComGE	-
ACFKHJ_RS09895	comGD	1912431..1912838 (-)	408	WP_392453250.1	competence type IV pilus minor pilin ComGD	-
ACFKHJ_RS09900	comYC	1912819..1913103 (-)	285	WP_277940772.1	competence type IV pilus major pilin ComGC	Machinery gene
ACFKHJ_RS09905	comYB	1913105..1914142 (-)	1038	WP_174846405.1	competence type IV pilus assembly protein ComGB	Machinery gene
ACFKHJ_RS09910	comYA	1914054..1915004 (-)	951	WP_277745466.1	competence type IV pilus ATPase ComGA	Machinery gene
ACFKHJ_RS09915	-	1915092..1916042 (+)	951	WP_216806334.1	S66 peptidase family protein	-
ACFKHJ_RS09920	-	1916075..1916443 (-)	369	WP_171989702.1	DUF1033 family protein	-

Sequence

Protein

• Length: 94 a.a.
• Molecular weight: 10783.87 Da
• Isoelectric Point: 5.2290

>NTDB_id=1059232 ACFKHJ_RS09900 WP_277940772.1 1912819..1913103(-) (comYC) [Streptococcus parasuis strain FZ1]
MKKMLKKKVKGFTLIEMLVVLGIISILLLLFVPNLSKQKEVIQKKGDAAIVKIVESQMDIYELEHGVRPTAEELEDLEMI
TEEQLKEYNNAPKE

Nucleotide

• Length: 285 bp

>NTDB_id=1059232 ACFKHJ_RS09900 WP_277940772.1 1912819..1913103(-) (comYC) [Streptococcus parasuis strain FZ1]
ATGAAAAAAATGTTGAAAAAGAAAGTCAAAGGATTCACTTTGATCGAAATGTTAGTGGTGCTTGGAATTATTAGTATTCT
CTTGCTATTATTTGTGCCAAATCTCAGTAAGCAAAAAGAAGTAATTCAGAAGAAAGGGGACGCAGCAATTGTAAAAATAG
TTGAAAGTCAAATGGACATTTACGAATTGGAGCATGGTGTTCGTCCAACAGCAGAAGAATTAGAAGATTTGGAAATGATA
ACTGAGGAACAACTCAAAGAGTACAATAATGCACCTAAAGAATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (6-30)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYC	Streptococcus suis isolate S10	66.667	98.936	0.66
comGC/cglC	Streptococcus mitis SK321	58.065	98.936	0.574
comGC/cglC	Streptococcus pneumoniae Rx1	57.609	97.872	0.564
comGC/cglC	Streptococcus pneumoniae D39	57.609	97.872	0.564
comGC/cglC	Streptococcus pneumoniae R6	57.609	97.872	0.564
comGC/cglC	Streptococcus mitis NCTC 12261	57.609	97.872	0.564
comGC/cglC	Streptococcus pneumoniae TIGR4	57.609	97.872	0.564
comGC	Lactococcus lactis subsp. cremoris KW2	55.556	95.745	0.532
comYC	Streptococcus mutans UA140	53.333	95.745	0.511
comYC	Streptococcus mutans UA159	53.333	95.745	0.511
comYC	Streptococcus gordonii str. Challis substr. CH1	52.809	94.681	0.5
comGC	Latilactobacillus sakei subsp. sakei 23K	45.238	89.362	0.404
comGC	Staphylococcus aureus N315	52.113	75.532	0.394
comGC	Staphylococcus aureus MW2	52.113	75.532	0.394
comGC	Bacillus subtilis subsp. subtilis str. 168	50.746	71.277	0.362