Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYF   Type   Machinery gene
Locus tag   ACFKHJ_RS09885 Genome accession   NZ_CP170759
Coordinates   1911745..1912179 (-) Length   144 a.a.
NCBI ID   WP_392452627.1    Uniprot ID   -
Organism   Streptococcus parasuis strain FZ1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1906745..1917179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFKHJ_RS09860 - 1906940..1908196 (-) 1257 WP_277745460.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  ACFKHJ_RS09865 - 1908251..1908802 (-) 552 WP_216806342.1 folate family ECF transporter S component -
  ACFKHJ_RS09870 - 1909057..1910244 (-) 1188 WP_392452623.1 acetate kinase -
  ACFKHJ_RS09875 comYH 1910294..1911247 (-) 954 WP_392452625.1 class I SAM-dependent methyltransferase Machinery gene
  ACFKHJ_RS09880 comGG 1911267..1911767 (-) 501 WP_171989710.1 competence type IV pilus minor pilin ComGG -
  ACFKHJ_RS09885 comYF 1911745..1912179 (-) 435 WP_392452627.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACFKHJ_RS09890 comGE 1912166..1912459 (-) 294 WP_392452628.1 competence type IV pilus minor pilin ComGE -
  ACFKHJ_RS09895 comGD 1912431..1912838 (-) 408 WP_392453250.1 competence type IV pilus minor pilin ComGD -
  ACFKHJ_RS09900 comYC 1912819..1913103 (-) 285 WP_277940772.1 competence type IV pilus major pilin ComGC Machinery gene
  ACFKHJ_RS09905 comYB 1913105..1914142 (-) 1038 WP_174846405.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACFKHJ_RS09910 comYA 1914054..1915004 (-) 951 WP_277745466.1 competence type IV pilus ATPase ComGA Machinery gene
  ACFKHJ_RS09915 - 1915092..1916042 (+) 951 WP_216806334.1 S66 peptidase family protein -
  ACFKHJ_RS09920 - 1916075..1916443 (-) 369 WP_171989702.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16436.83 Da        Isoelectric Point: 7.1334

>NTDB_id=1059231 ACFKHJ_RS09885 WP_392452627.1 1911745..1912179(-) (comYF) [Streptococcus parasuis strain FZ1]
MRKTKLAAFTLLECLIALLIVSGSLLVIEGLSKLIAHEVRYQERHVEKQWLLFCDQLRAEWEGASLDRVDSGKLYLTKGE
KSLAFGKSVADDFRKTNANGQGYQPMLYKVYSATYAQQGEVIQLDVTFESGEERSFRYVFEKTN

Nucleotide


Download         Length: 435 bp        

>NTDB_id=1059231 ACFKHJ_RS09885 WP_392452627.1 1911745..1912179(-) (comYF) [Streptococcus parasuis strain FZ1]
TTGAGAAAAACTAAGTTAGCCGCGTTCACCCTCTTGGAATGTTTAATTGCCTTGCTCATTGTTTCTGGCAGCTTGCTAGT
GATTGAAGGTTTATCAAAATTGATAGCGCATGAGGTTCGCTATCAAGAGCGTCATGTGGAAAAACAGTGGTTACTATTTT
GTGATCAATTGCGGGCTGAATGGGAAGGAGCAAGTCTTGATCGGGTTGATTCTGGAAAGTTGTACCTAACCAAAGGGGAA
AAATCATTGGCATTTGGCAAGTCTGTGGCAGATGATTTTCGCAAGACAAATGCAAATGGTCAGGGCTATCAGCCCATGTT
GTACAAAGTTTATTCAGCTACTTACGCCCAACAAGGCGAGGTTATACAGCTGGATGTAACATTTGAAAGTGGGGAGGAAA
GGAGTTTTAGGTATGTTTTTGAAAAGACGAATTAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(39-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYF Streptococcus mutans UA159

53.472

100

0.535
  comYF Streptococcus mutans UA140

53.472

100

0.535
  comGF Lactococcus lactis subsp. cremoris KW2

47.518

97.917

0.465
  comGF/cglF Streptococcus mitis NCTC 12261

46.429

97.222

0.451
  comGF/cglF Streptococcus pneumoniae Rx1

44.928

95.833

0.431
  comGF/cglF Streptococcus pneumoniae D39

44.928

95.833

0.431
  comGF/cglF Streptococcus pneumoniae R6

44.928

95.833

0.431
  comGF/cglF Streptococcus pneumoniae TIGR4

44.928

95.833

0.431
  comGF/cglF Streptococcus mitis SK321

43.885

96.528

0.424

Multiple sequence alignment