Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   ACFKHJ_RS09905 Genome accession   NZ_CP170759
Coordinates   1913105..1914142 (-) Length   345 a.a.
NCBI ID   WP_174846405.1    Uniprot ID   -
Organism   Streptococcus parasuis strain FZ1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1908105..1919142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFKHJ_RS09865 - 1908251..1908802 (-) 552 WP_216806342.1 folate family ECF transporter S component -
  ACFKHJ_RS09870 - 1909057..1910244 (-) 1188 WP_392452623.1 acetate kinase -
  ACFKHJ_RS09875 comYH 1910294..1911247 (-) 954 WP_392452625.1 class I SAM-dependent methyltransferase Machinery gene
  ACFKHJ_RS09880 comGG 1911267..1911767 (-) 501 WP_171989710.1 competence type IV pilus minor pilin ComGG -
  ACFKHJ_RS09885 comYF 1911745..1912179 (-) 435 WP_392452627.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACFKHJ_RS09890 comGE 1912166..1912459 (-) 294 WP_392452628.1 competence type IV pilus minor pilin ComGE -
  ACFKHJ_RS09895 comGD 1912431..1912838 (-) 408 WP_392453250.1 competence type IV pilus minor pilin ComGD -
  ACFKHJ_RS09900 comYC 1912819..1913103 (-) 285 WP_277940772.1 competence type IV pilus major pilin ComGC Machinery gene
  ACFKHJ_RS09905 comYB 1913105..1914142 (-) 1038 WP_174846405.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACFKHJ_RS09910 comYA 1914054..1915004 (-) 951 WP_277745466.1 competence type IV pilus ATPase ComGA Machinery gene
  ACFKHJ_RS09915 - 1915092..1916042 (+) 951 WP_216806334.1 S66 peptidase family protein -
  ACFKHJ_RS09920 - 1916075..1916443 (-) 369 WP_171989702.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39311.35 Da        Isoelectric Point: 9.4587

>NTDB_id=1059233 ACFKHJ_RS09905 WP_174846405.1 1913105..1914142(-) (comYB) [Streptococcus parasuis strain FZ1]
MSKLNAFLQRDISVLGRQKQKKLSLVRQRKVIELFNNLFASGFHLGEIVDFLKRSQLLADQYTQVLSDGLLAGKPFSSLL
GDLRFSDAVVTQVALAEVHGNTSLSLNHIQSYLENVSKVRKKLIEVATYPIILLAFLLLIMLGLKNYLLPQLEEGNVATI
LIQHLPIIFLSFCGLFFLAVLGGLIWYRRTNKIKAFSRLVALPFFGKLIQTYLTAYYAREWGSLIGQGLDMPQIVGLMQE
QKSQLFREIGEDLERSLSDGHSFHAHIQTYGFFKRELSLMIEYGQVKSKLGSELSVYATECWEEFFTRVNRAMQLIQPLV
FLFVALMVVLIYAAMLLPIYQNMEL

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1059233 ACFKHJ_RS09905 WP_174846405.1 1913105..1914142(-) (comYB) [Streptococcus parasuis strain FZ1]
ATGAGCAAATTGAATGCCTTCTTGCAGCGGGACATATCAGTCCTCGGCAGGCAGAAACAGAAAAAATTGTCCTTGGTTCG
ACAGCGTAAGGTGATTGAGCTCTTTAACAATCTTTTTGCTAGTGGATTTCACTTGGGAGAAATTGTCGATTTTCTCAAAC
GGAGTCAACTCTTGGCTGACCAATACACGCAAGTTTTGTCCGACGGTCTTCTTGCAGGAAAGCCATTTTCAAGTCTTTTG
GGAGATTTACGCTTTTCGGATGCGGTTGTCACTCAGGTGGCCTTGGCGGAGGTTCATGGCAATACCAGTCTGAGTTTAAA
TCATATTCAATCTTATCTTGAAAATGTTAGCAAGGTGCGTAAAAAATTGATAGAAGTAGCAACCTATCCAATCATCTTGC
TTGCCTTTTTATTATTGATAATGTTGGGACTGAAAAACTATTTGTTGCCCCAGTTGGAAGAAGGAAATGTTGCGACTATA
TTGATTCAACACTTGCCAATAATCTTTTTATCCTTTTGTGGCCTTTTCTTTCTTGCTGTCTTAGGTGGGCTTATTTGGTA
TCGCAGAACAAATAAAATCAAGGCTTTTTCTCGCTTAGTAGCTCTGCCATTTTTCGGAAAACTCATCCAAACCTATTTGA
CCGCCTATTACGCGAGGGAGTGGGGAAGCTTGATTGGTCAGGGACTTGATATGCCTCAGATTGTGGGCTTGATGCAGGAA
CAAAAATCACAGCTTTTTCGTGAGATTGGTGAAGATTTAGAGCGTTCGCTTTCTGATGGGCATAGTTTCCATGCTCATAT
CCAAACGTATGGCTTTTTCAAACGGGAGCTGAGTCTAATGATTGAGTATGGGCAAGTCAAATCAAAATTAGGAAGTGAGC
TATCTGTGTATGCAACAGAGTGTTGGGAGGAATTTTTTACTCGTGTTAATAGGGCCATGCAGTTGATTCAACCATTGGTT
TTTCTCTTTGTGGCCTTAATGGTCGTTCTCATCTATGCAGCCATGTTGCTGCCAATTTATCAGAATATGGAGTTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(218-338)

Type II secretion system (T2SS), protein F (T2SSF)

(33-150)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus gordonii str. Challis substr. CH1

60.294

98.551

0.594
  comYB Streptococcus mutans UA140

60.294

98.551

0.594
  comYB Streptococcus mutans UA159

60.294

98.551

0.594
  comGB/cglB Streptococcus mitis SK321

60

97.101

0.583
  comGB/cglB Streptococcus mitis NCTC 12261

59.701

97.101

0.58
  comGB/cglB Streptococcus pneumoniae Rx1

59.104

97.101

0.574
  comGB/cglB Streptococcus pneumoniae D39

59.104

97.101

0.574
  comGB/cglB Streptococcus pneumoniae R6

59.104

97.101

0.574
  comGB/cglB Streptococcus pneumoniae TIGR4

59.104

97.101

0.574
  comGB Lactococcus lactis subsp. cremoris KW2

51.335

97.681

0.501

Multiple sequence alignment