Detailed information
Bioinformatically predicted
Overview
| Name | comYA | Type | Machinery gene |
| Locus tag | ACFKHJ_RS09910 | Genome accession | NZ_CP170759 |
| Coordinates | 1914054..1915004 (-) | Length | 316 a.a. |
| NCBI ID | WP_277745466.1 | Uniprot ID | - |
| Organism | Streptococcus parasuis strain FZ1 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1909054..1920004
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACFKHJ_RS09870 | - | 1909057..1910244 (-) | 1188 | WP_392452623.1 | acetate kinase | - |
| ACFKHJ_RS09875 | comYH | 1910294..1911247 (-) | 954 | WP_392452625.1 | class I SAM-dependent methyltransferase | Machinery gene |
| ACFKHJ_RS09880 | comGG | 1911267..1911767 (-) | 501 | WP_171989710.1 | competence type IV pilus minor pilin ComGG | - |
| ACFKHJ_RS09885 | comYF | 1911745..1912179 (-) | 435 | WP_392452627.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| ACFKHJ_RS09890 | comGE | 1912166..1912459 (-) | 294 | WP_392452628.1 | competence type IV pilus minor pilin ComGE | - |
| ACFKHJ_RS09895 | comGD | 1912431..1912838 (-) | 408 | WP_392453250.1 | competence type IV pilus minor pilin ComGD | - |
| ACFKHJ_RS09900 | comYC | 1912819..1913103 (-) | 285 | WP_277940772.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ACFKHJ_RS09905 | comYB | 1913105..1914142 (-) | 1038 | WP_174846405.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| ACFKHJ_RS09910 | comYA | 1914054..1915004 (-) | 951 | WP_277745466.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| ACFKHJ_RS09915 | - | 1915092..1916042 (+) | 951 | WP_216806334.1 | S66 peptidase family protein | - |
| ACFKHJ_RS09920 | - | 1916075..1916443 (-) | 369 | WP_171989702.1 | DUF1033 family protein | - |
Sequence
Protein
Download Length: 316 a.a. Molecular weight: 35570.67 Da Isoelectric Point: 5.7230
>NTDB_id=1059234 ACFKHJ_RS09910 WP_277745466.1 1914054..1915004(-) (comYA) [Streptococcus parasuis strain FZ1]
MIQEKARKMIEEAVVERVSDIYLIPRGENYQVYHRIMDEREYIQELAEDEVMAIISHFKFLAGLNVGEKRRCQQGSCDYN
YVSGEISLRLSTVGDYRGKESLVIRLLYDQDQQLKFWFGALERIAQEIKGRGLYLFSGPVGSGKTTLMYQLARLKFPDKQ
ILTIEDPVEIKQEDMLQLQLNEAIGATYDNLIKLSLRHRPDLLIIGEIRDAETARAVIRASLTGATVFSTVHARSVAGVY
ARMLELGVSPEELNNALQGIAYQRLIGGGGVVDFAKGNYQNHSSDKWNEQIECLLAAGHISPRQAETEKIVLGSTA
MIQEKARKMIEEAVVERVSDIYLIPRGENYQVYHRIMDEREYIQELAEDEVMAIISHFKFLAGLNVGEKRRCQQGSCDYN
YVSGEISLRLSTVGDYRGKESLVIRLLYDQDQQLKFWFGALERIAQEIKGRGLYLFSGPVGSGKTTLMYQLARLKFPDKQ
ILTIEDPVEIKQEDMLQLQLNEAIGATYDNLIKLSLRHRPDLLIIGEIRDAETARAVIRASLTGATVFSTVHARSVAGVY
ARMLELGVSPEELNNALQGIAYQRLIGGGGVVDFAKGNYQNHSSDKWNEQIECLLAAGHISPRQAETEKIVLGSTA
Nucleotide
Download Length: 951 bp
>NTDB_id=1059234 ACFKHJ_RS09910 WP_277745466.1 1914054..1915004(-) (comYA) [Streptococcus parasuis strain FZ1]
ATGATTCAAGAAAAAGCAAGAAAAATGATTGAAGAGGCAGTTGTCGAAAGGGTCAGTGATATTTATTTGATTCCAAGAGG
AGAAAACTACCAAGTCTATCATCGAATAATGGATGAACGGGAATATATTCAAGAATTAGCCGAGGATGAGGTGATGGCCA
TTATTAGCCATTTCAAGTTTTTAGCGGGTTTGAATGTCGGTGAAAAACGGCGTTGCCAGCAAGGCTCTTGTGACTACAAT
TATGTTTCAGGGGAGATTTCCCTTCGGTTATCAACGGTTGGTGATTATCGTGGTAAAGAAAGTTTGGTCATTCGTCTGCT
CTATGATCAAGATCAACAACTTAAATTTTGGTTTGGAGCATTGGAGAGGATTGCTCAAGAAATCAAGGGACGAGGGCTCT
ATCTTTTTTCAGGGCCGGTCGGTTCTGGCAAGACTACACTCATGTACCAGCTGGCGAGATTGAAATTTCCAGATAAGCAA
ATTCTAACTATAGAAGATCCAGTGGAAATCAAGCAGGAAGATATGCTCCAACTCCAGCTCAATGAGGCAATTGGTGCTAC
CTATGATAATCTCATCAAACTATCACTTCGTCATCGACCAGATTTACTGATTATTGGAGAAATTCGAGATGCAGAAACTG
CTCGGGCAGTAATTCGAGCTAGTTTGACAGGGGCAACGGTCTTCTCAACGGTTCATGCTAGAAGTGTTGCTGGTGTCTAT
GCTCGCATGTTAGAACTGGGTGTAAGTCCTGAAGAATTGAATAATGCTCTTCAAGGAATTGCCTATCAACGATTAATAGG
GGGAGGAGGTGTTGTTGATTTTGCAAAAGGAAACTACCAAAACCATTCCTCGGACAAGTGGAATGAGCAAATTGAATGCC
TTCTTGCAGCGGGACATATCAGTCCTCGGCAGGCAGAAACAGAAAAAATTGTCCTTGGTTCGACAGCGTAA
ATGATTCAAGAAAAAGCAAGAAAAATGATTGAAGAGGCAGTTGTCGAAAGGGTCAGTGATATTTATTTGATTCCAAGAGG
AGAAAACTACCAAGTCTATCATCGAATAATGGATGAACGGGAATATATTCAAGAATTAGCCGAGGATGAGGTGATGGCCA
TTATTAGCCATTTCAAGTTTTTAGCGGGTTTGAATGTCGGTGAAAAACGGCGTTGCCAGCAAGGCTCTTGTGACTACAAT
TATGTTTCAGGGGAGATTTCCCTTCGGTTATCAACGGTTGGTGATTATCGTGGTAAAGAAAGTTTGGTCATTCGTCTGCT
CTATGATCAAGATCAACAACTTAAATTTTGGTTTGGAGCATTGGAGAGGATTGCTCAAGAAATCAAGGGACGAGGGCTCT
ATCTTTTTTCAGGGCCGGTCGGTTCTGGCAAGACTACACTCATGTACCAGCTGGCGAGATTGAAATTTCCAGATAAGCAA
ATTCTAACTATAGAAGATCCAGTGGAAATCAAGCAGGAAGATATGCTCCAACTCCAGCTCAATGAGGCAATTGGTGCTAC
CTATGATAATCTCATCAAACTATCACTTCGTCATCGACCAGATTTACTGATTATTGGAGAAATTCGAGATGCAGAAACTG
CTCGGGCAGTAATTCGAGCTAGTTTGACAGGGGCAACGGTCTTCTCAACGGTTCATGCTAGAAGTGTTGCTGGTGTCTAT
GCTCGCATGTTAGAACTGGGTGTAAGTCCTGAAGAATTGAATAATGCTCTTCAAGGAATTGCCTATCAACGATTAATAGG
GGGAGGAGGTGTTGTTGATTTTGCAAAAGGAAACTACCAAAACCATTCCTCGGACAAGTGGAATGAGCAAATTGAATGCC
TTCTTGCAGCGGGACATATCAGTCCTCGGCAGGCAGAAACAGAAAAAATTGTCCTTGGTTCGACAGCGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYA | Streptococcus gordonii str. Challis substr. CH1 |
68.065 |
98.101 |
0.668 |
| comYA | Streptococcus mutans UA159 |
67.846 |
98.418 |
0.668 |
| comYA | Streptococcus mutans UA140 |
67.846 |
98.418 |
0.668 |
| comGA/cglA/cilD | Streptococcus pneumoniae D39 |
64.839 |
98.101 |
0.636 |
| comGA/cglA/cilD | Streptococcus pneumoniae Rx1 |
64.839 |
98.101 |
0.636 |
| comGA/cglA/cilD | Streptococcus pneumoniae R6 |
64.839 |
98.101 |
0.636 |
| comGA/cglA/cilD | Streptococcus pneumoniae TIGR4 |
64.839 |
98.101 |
0.636 |
| comGA/cglA/cilD | Streptococcus mitis NCTC 12261 |
64.516 |
98.101 |
0.633 |
| comGA/cglA | Streptococcus sobrinus strain NIDR 6715-7 |
64.516 |
98.101 |
0.633 |
| comGA | Lactococcus lactis subsp. cremoris KW2 |
54.89 |
100 |
0.551 |
| comGA | Latilactobacillus sakei subsp. sakei 23K |
41.877 |
87.658 |
0.367 |