Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | ACFJIW_RS23965 | Genome accession | NZ_CP170554 |
| Coordinates | 5744027..5745139 (+) | Length | 370 a.a. |
| NCBI ID | WP_386067823.1 | Uniprot ID | - |
| Organism | Tahibacter sp. UC22_41 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5739027..5750139
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACFJIW_RS23945 (ACFJIW_23945) | - | 5739836..5740048 (-) | 213 | WP_386067816.1 | YdcH family protein | - |
| ACFJIW_RS23950 (ACFJIW_23950) | - | 5740673..5742028 (-) | 1356 | WP_386067818.1 | hypothetical protein | - |
| ACFJIW_RS23955 (ACFJIW_23955) | - | 5742204..5743499 (-) | 1296 | WP_386067820.1 | OmpA family protein | - |
| ACFJIW_RS23960 (ACFJIW_23960) | - | 5743496..5743801 (-) | 306 | WP_386067821.1 | DUF4398 domain-containing protein | - |
| ACFJIW_RS23965 (ACFJIW_23965) | pilU | 5744027..5745139 (+) | 1113 | WP_386067823.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| ACFJIW_RS23970 (ACFJIW_23970) | - | 5745261..5747576 (-) | 2316 | WP_386067824.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 370 a.a. Molecular weight: 41042.37 Da Isoelectric Point: 6.6434
>NTDB_id=1057976 ACFJIW_RS23965 WP_386067823.1 5744027..5745139(+) (pilU) [Tahibacter sp. UC22_41]
MDIGYFLKLMTEKGASDMFLTTGAPVNIKVEGKLYPLGNTGLPGGMVKKIAYSLMDEGQVPQFERDLELNMAIAVKDAGR
FRINVFKQRGEVGMVIRAIKSEIPSVDALKLPQIFKDIIMEPRGLILVVGATGSGKSTTLAAMIDHRNSSQSGHILTIED
PIEYLHRHKKSIVNQREVGLDTHSYHEALKNAMREAPDVIMIGEIRDVETMEAAIAFSETGHICLATLHSNNADQTIERI
LNFFPEASHKNILMNLALNLKAVISQRLVIGKDGRRLPAVEILINTPHIRDLMRRGQVHEIKEAMDRSLQEGMQTFDRAL
YTLYKEGRIELEEALAKADSRDGLALKIRLAEGGGDSSSAEHDPFNMSAF
MDIGYFLKLMTEKGASDMFLTTGAPVNIKVEGKLYPLGNTGLPGGMVKKIAYSLMDEGQVPQFERDLELNMAIAVKDAGR
FRINVFKQRGEVGMVIRAIKSEIPSVDALKLPQIFKDIIMEPRGLILVVGATGSGKSTTLAAMIDHRNSSQSGHILTIED
PIEYLHRHKKSIVNQREVGLDTHSYHEALKNAMREAPDVIMIGEIRDVETMEAAIAFSETGHICLATLHSNNADQTIERI
LNFFPEASHKNILMNLALNLKAVISQRLVIGKDGRRLPAVEILINTPHIRDLMRRGQVHEIKEAMDRSLQEGMQTFDRAL
YTLYKEGRIELEEALAKADSRDGLALKIRLAEGGGDSSSAEHDPFNMSAF
Nucleotide
Download Length: 1113 bp
>NTDB_id=1057976 ACFJIW_RS23965 WP_386067823.1 5744027..5745139(+) (pilU) [Tahibacter sp. UC22_41]
ATGGATATCGGCTATTTCCTCAAGCTCATGACCGAGAAGGGCGCGTCGGACATGTTCCTGACCACGGGCGCCCCCGTGAA
CATCAAGGTCGAGGGCAAGCTCTACCCGCTGGGCAACACCGGCCTGCCCGGCGGCATGGTCAAGAAGATCGCCTACTCGC
TGATGGACGAAGGCCAGGTGCCGCAGTTCGAGCGCGACCTCGAGCTGAACATGGCGATCGCGGTCAAGGACGCCGGCCGC
TTCCGCATCAACGTGTTCAAGCAGCGCGGCGAAGTCGGCATGGTGATCCGCGCGATCAAGAGCGAGATCCCGTCGGTCGA
CGCGCTCAAGCTGCCGCAGATCTTCAAAGACATCATCATGGAGCCGCGCGGCCTGATCCTCGTGGTCGGCGCGACGGGCT
CGGGCAAGTCGACCACGCTCGCGGCGATGATCGATCACCGCAACTCCAGCCAGTCGGGCCATATCCTGACGATCGAAGAT
CCGATCGAATACCTGCACCGGCACAAGAAATCCATCGTCAACCAGCGCGAAGTCGGCCTCGACACGCACAGCTACCACGA
GGCGCTGAAGAACGCGATGCGCGAAGCGCCCGACGTCATCATGATCGGCGAAATCCGCGACGTGGAGACGATGGAAGCGG
CAATCGCGTTCTCCGAAACCGGCCACATCTGCCTCGCGACCCTGCACTCGAACAACGCCGACCAGACCATCGAGCGCATC
CTCAACTTCTTCCCCGAGGCGTCGCACAAGAACATCCTGATGAATCTGGCCCTGAACCTGAAGGCCGTGATTTCGCAGCG
CCTCGTGATCGGCAAGGACGGCCGCCGCCTGCCGGCCGTCGAGATCCTGATCAACACGCCGCACATCCGCGACCTCATGC
GCCGCGGCCAGGTGCACGAAATCAAAGAGGCGATGGACCGCAGCCTGCAGGAAGGCATGCAGACCTTCGACCGCGCGCTG
TACACCCTGTACAAGGAAGGCCGCATCGAGCTCGAGGAAGCGCTGGCCAAGGCCGACTCGCGCGACGGTCTCGCGCTGAA
GATCCGCCTGGCCGAAGGCGGCGGCGACAGCAGCTCGGCCGAACACGATCCGTTCAACATGTCGGCGTTCTGA
ATGGATATCGGCTATTTCCTCAAGCTCATGACCGAGAAGGGCGCGTCGGACATGTTCCTGACCACGGGCGCCCCCGTGAA
CATCAAGGTCGAGGGCAAGCTCTACCCGCTGGGCAACACCGGCCTGCCCGGCGGCATGGTCAAGAAGATCGCCTACTCGC
TGATGGACGAAGGCCAGGTGCCGCAGTTCGAGCGCGACCTCGAGCTGAACATGGCGATCGCGGTCAAGGACGCCGGCCGC
TTCCGCATCAACGTGTTCAAGCAGCGCGGCGAAGTCGGCATGGTGATCCGCGCGATCAAGAGCGAGATCCCGTCGGTCGA
CGCGCTCAAGCTGCCGCAGATCTTCAAAGACATCATCATGGAGCCGCGCGGCCTGATCCTCGTGGTCGGCGCGACGGGCT
CGGGCAAGTCGACCACGCTCGCGGCGATGATCGATCACCGCAACTCCAGCCAGTCGGGCCATATCCTGACGATCGAAGAT
CCGATCGAATACCTGCACCGGCACAAGAAATCCATCGTCAACCAGCGCGAAGTCGGCCTCGACACGCACAGCTACCACGA
GGCGCTGAAGAACGCGATGCGCGAAGCGCCCGACGTCATCATGATCGGCGAAATCCGCGACGTGGAGACGATGGAAGCGG
CAATCGCGTTCTCCGAAACCGGCCACATCTGCCTCGCGACCCTGCACTCGAACAACGCCGACCAGACCATCGAGCGCATC
CTCAACTTCTTCCCCGAGGCGTCGCACAAGAACATCCTGATGAATCTGGCCCTGAACCTGAAGGCCGTGATTTCGCAGCG
CCTCGTGATCGGCAAGGACGGCCGCCGCCTGCCGGCCGTCGAGATCCTGATCAACACGCCGCACATCCGCGACCTCATGC
GCCGCGGCCAGGTGCACGAAATCAAAGAGGCGATGGACCGCAGCCTGCAGGAAGGCATGCAGACCTTCGACCGCGCGCTG
TACACCCTGTACAAGGAAGGCCGCATCGAGCTCGAGGAAGCGCTGGCCAAGGCCGACTCGCGCGACGGTCTCGCGCTGAA
GATCCGCCTGGCCGAAGGCGGCGGCGACAGCAGCTCGGCCGAACACGATCCGTTCAACATGTCGGCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
50.964 |
98.108 |
0.5 |
| pilU | Acinetobacter baylyi ADP1 |
50.565 |
95.676 |
0.484 |
| pilU | Vibrio cholerae strain A1552 |
49.153 |
95.676 |
0.47 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
46.018 |
91.622 |
0.422 |
| pilT | Pseudomonas aeruginosa PAK |
42.308 |
91.351 |
0.386 |
| pilT | Acinetobacter baylyi ADP1 |
42.059 |
91.892 |
0.386 |
| pilT | Acinetobacter baumannii strain A118 |
42.012 |
91.351 |
0.384 |
| pilT | Acinetobacter baumannii D1279779 |
42.012 |
91.351 |
0.384 |
| pilT | Acinetobacter nosocomialis M2 |
42.012 |
91.351 |
0.384 |
| pilT | Pseudomonas stutzeri DSM 10701 |
41.716 |
91.351 |
0.381 |
| pilT | Legionella pneumophila strain Lp02 |
41.641 |
88.919 |
0.37 |
| pilT | Legionella pneumophila strain ERS1305867 |
41.641 |
88.919 |
0.37 |
| pilT | Neisseria gonorrhoeae MS11 |
38.905 |
93.784 |
0.365 |
| pilT | Neisseria meningitidis 8013 |
38.905 |
93.784 |
0.365 |