Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ABZP12_RS05085 | Genome accession | NZ_CP170252 |
| Coordinates | 1222273..1222701 (+) | Length | 142 a.a. |
| NCBI ID | WP_011348339.1 | Uniprot ID | Q3BQ79 |
| Organism | Xanthomonas euvesicatoria strain Xanthomonas | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1217273..1227701
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABZP12_RS05065 | - | 1218261..1218992 (-) | 732 | Protein_991 | DUF6531 domain-containing protein | - |
| ABZP12_RS05070 (ABZP12_01011) | coaE | 1219174..1219785 (-) | 612 | WP_011348341.1 | dephospho-CoA kinase | - |
| ABZP12_RS05075 (ABZP12_01012) | - | 1219799..1220662 (-) | 864 | WP_008576868.1 | A24 family peptidase | - |
| ABZP12_RS05080 (ABZP12_01013) | pilC | 1220669..1221931 (-) | 1263 | WP_011348340.1 | type II secretion system F family protein | Machinery gene |
| ABZP12_RS05085 (ABZP12_01014) | pilA | 1222273..1222701 (+) | 429 | WP_011348339.1 | pilin | Machinery gene |
| ABZP12_RS05090 (ABZP12_01015) | pilB | 1222859..1224568 (+) | 1710 | WP_175393205.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ABZP12_RS05095 (ABZP12_01017) | pilR | 1224986..1226440 (-) | 1455 | WP_042840930.1 | sigma-54 dependent transcriptional regulator | Regulator |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 14343.43 Da Isoelectric Point: 9.1206
>NTDB_id=1056092 ABZP12_RS05085 WP_011348339.1 1222273..1222701(+) (pilA) [Xanthomonas euvesicatoria strain Xanthomonas]
MKKQNGFTLIELMIVVAIIAILAAIALPAYQDYTVRGRVSEAMVAASAAKTVVAENAANGSALNSGWTAPTATNNVASVA
VAAATGNITVTTTDKAGGGTIIFAPTANGAALTSGTVPTDRISWDCKGGTLVAKYRPAECRT
MKKQNGFTLIELMIVVAIIAILAAIALPAYQDYTVRGRVSEAMVAASAAKTVVAENAANGSALNSGWTAPTATNNVASVA
VAAATGNITVTTTDKAGGGTIIFAPTANGAALTSGTVPTDRISWDCKGGTLVAKYRPAECRT
Nucleotide
Download Length: 429 bp
>NTDB_id=1056092 ABZP12_RS05085 WP_011348339.1 1222273..1222701(+) (pilA) [Xanthomonas euvesicatoria strain Xanthomonas]
ATGAAGAAGCAAAACGGCTTTACCCTTATCGAACTGATGATCGTTGTCGCGATCATCGCAATCCTTGCCGCCATCGCGTT
GCCGGCCTACCAGGACTACACCGTTCGCGGCCGCGTCTCTGAAGCGATGGTTGCCGCGTCTGCCGCCAAGACGGTGGTGG
CCGAAAATGCCGCCAACGGCTCTGCCCTGAATAGCGGGTGGACCGCTCCTACGGCGACCAATAATGTTGCCAGCGTAGCC
GTTGCTGCCGCTACGGGCAATATTACTGTGACCACTACCGATAAGGCCGGCGGCGGCACGATCATTTTTGCTCCCACCGC
TAACGGCGCTGCGCTGACTTCCGGCACCGTTCCTACCGATCGCATTTCGTGGGATTGCAAGGGTGGCACCTTGGTTGCCA
AGTACCGTCCGGCTGAATGCCGTACCTAA
ATGAAGAAGCAAAACGGCTTTACCCTTATCGAACTGATGATCGTTGTCGCGATCATCGCAATCCTTGCCGCCATCGCGTT
GCCGGCCTACCAGGACTACACCGTTCGCGGCCGCGTCTCTGAAGCGATGGTTGCCGCGTCTGCCGCCAAGACGGTGGTGG
CCGAAAATGCCGCCAACGGCTCTGCCCTGAATAGCGGGTGGACCGCTCCTACGGCGACCAATAATGTTGCCAGCGTAGCC
GTTGCTGCCGCTACGGGCAATATTACTGTGACCACTACCGATAAGGCCGGCGGCGGCACGATCATTTTTGCTCCCACCGC
TAACGGCGCTGCGCTGACTTCCGGCACCGTTCCTACCGATCGCATTTCGTGGGATTGCAAGGGTGGCACCTTGGTTGCCA
AGTACCGTCCGGCTGAATGCCGTACCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Ralstonia pseudosolanacearum GMI1000 |
51.572 |
100 |
0.577 |
| pilA2 | Legionella pneumophila str. Paris |
54.795 |
100 |
0.563 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
54.795 |
100 |
0.563 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
39.894 |
100 |
0.528 |
| comP | Acinetobacter baylyi ADP1 |
47.468 |
100 |
0.528 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
41.096 |
100 |
0.423 |
| pilA | Acinetobacter baumannii strain A118 |
39.716 |
99.296 |
0.394 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
38.571 |
98.592 |
0.38 |
| pilA | Vibrio cholerae C6706 |
33.766 |
100 |
0.366 |
| pilA | Vibrio cholerae strain A1552 |
33.766 |
100 |
0.366 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
33.766 |
100 |
0.366 |