Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   ABZP12_RS05090 Genome accession   NZ_CP170252
Coordinates   1222859..1224568 (+) Length   569 a.a.
NCBI ID   WP_175393205.1    Uniprot ID   -
Organism   Xanthomonas euvesicatoria strain Xanthomonas     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1217859..1229568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZP12_RS05065 - 1218261..1218992 (-) 732 Protein_991 DUF6531 domain-containing protein -
  ABZP12_RS05070 (ABZP12_01011) coaE 1219174..1219785 (-) 612 WP_011348341.1 dephospho-CoA kinase -
  ABZP12_RS05075 (ABZP12_01012) - 1219799..1220662 (-) 864 WP_008576868.1 A24 family peptidase -
  ABZP12_RS05080 (ABZP12_01013) pilC 1220669..1221931 (-) 1263 WP_011348340.1 type II secretion system F family protein Machinery gene
  ABZP12_RS05085 (ABZP12_01014) pilA 1222273..1222701 (+) 429 WP_011348339.1 pilin Machinery gene
  ABZP12_RS05090 (ABZP12_01015) pilB 1222859..1224568 (+) 1710 WP_175393205.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABZP12_RS05095 (ABZP12_01017) pilR 1224986..1226440 (-) 1455 WP_042840930.1 sigma-54 dependent transcriptional regulator Regulator
  ABZP12_RS05100 (ABZP12_01018) - 1226708..1228321 (-) 1614 WP_042840934.1 PAS domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 569 a.a.        Molecular weight: 61695.62 Da        Isoelectric Point: 5.5986

>NTDB_id=1056093 ABZP12_RS05090 WP_175393205.1 1222859..1224568(+) (pilB) [Xanthomonas euvesicatoria strain Xanthomonas]
MGITGIARRLVQDGALDEASARTAMDQAAAAKIPLPQWFSEKKLVSASQLAAANAVEFGMPLLDVSAFDASQNAVKLVSE
ELLQKHQVLPLFKRGNRLFIGVSNPTQTRALDDIKFHTNLVVEAILVDEDQIRRTLEQWQASNASLGSSLGNDDEEMGDL
DVSAGDEDMGAGGDSGVDAKGDDTPVVKFVNKVLVDAIRRGASDIHFEPYEDDYRVRLRIDGLLKNVAKAPVKLNQRIAA
RLKVMSQLDIAEKRVPQDGRIKLNLSKTKQIDFRVSTLPTLFGEKVVLRILDGSAAKLGIDKLGYEADQQKLFLEAIHKP
YGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNNKRGMTFAAALRSFLRQDPDIIMVGEIR
DLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCNNCKRKSTLPDNALLAEGF
TPAQLAAGIELYEAVGCDECTEGYKGRTGIYQVMPMTDEIGAIVLEGGNAMQIAEAAQAIGIRDLRQSALMKAAHGVTSL
AEINRVTKD

Nucleotide


Download         Length: 1710 bp        

>NTDB_id=1056093 ABZP12_RS05090 WP_175393205.1 1222859..1224568(+) (pilB) [Xanthomonas euvesicatoria strain Xanthomonas]
GTGGGAATTACAGGCATTGCACGTCGTTTGGTGCAGGATGGAGCACTGGATGAGGCAAGTGCCCGTACCGCAATGGACCA
AGCCGCGGCGGCGAAGATTCCGCTTCCCCAATGGTTCTCCGAGAAAAAGCTGGTTTCAGCGTCTCAATTGGCCGCTGCCA
ACGCAGTCGAGTTCGGCATGCCGCTGCTCGATGTTTCTGCATTCGACGCCAGCCAGAACGCAGTAAAGCTCGTCAGTGAG
GAGCTGCTCCAGAAGCACCAAGTGCTGCCGCTGTTCAAGCGCGGCAACCGGTTGTTCATAGGGGTGAGCAACCCGACACA
GACTCGCGCGCTGGACGACATCAAGTTCCATACGAACTTAGTGGTCGAGGCGATCCTCGTCGACGAAGATCAGATCCGCC
GGACGCTCGAGCAGTGGCAGGCCAGCAATGCGTCGTTGGGTTCTTCGCTTGGCAACGACGACGAGGAAATGGGGGATCTG
GACGTCTCGGCCGGCGACGAGGACATGGGCGCCGGCGGGGATTCCGGGGTCGATGCCAAGGGCGACGACACGCCGGTGGT
GAAGTTCGTCAACAAGGTGCTGGTGGATGCGATCAGGCGGGGAGCCTCGGACATCCATTTCGAGCCGTATGAAGACGACT
ACCGGGTGCGCTTGCGCATCGACGGCTTGTTGAAGAACGTGGCCAAGGCGCCGGTGAAGCTGAACCAGCGCATCGCAGCG
CGCTTGAAGGTGATGTCGCAGCTGGATATCGCCGAGAAGCGGGTGCCGCAGGACGGGCGCATCAAGCTCAACCTGTCCAA
GACCAAGCAGATCGACTTTCGTGTCAGCACCTTGCCGACCCTGTTCGGTGAAAAAGTGGTGCTGCGTATCCTGGACGGCA
GCGCGGCCAAGCTGGGCATCGACAAGCTGGGCTATGAGGCGGACCAGCAGAAGCTGTTCCTAGAGGCGATCCACAAGCCG
TACGGGATGGTGCTGGTGACCGGGCCGACCGGCTCGGGCAAGACGGTGTCGTTGTACACCGCGCTGGGCATCCTCAACGA
CGAGACACGCAATATCTCCACCGCGGAGGACCCGGTTGAAATCCGCTTGCCTGGCGTCAATCAGGTGCAGCAGAACAACA
AGCGTGGCATGACCTTTGCCGCAGCGTTGCGCTCGTTCCTACGCCAGGACCCAGACATCATCATGGTCGGCGAAATCCGT
GACCTGGAGACGGCCGAGATTGCGATCAAGGCGGCGCAGACCGGTCACATGGTGCTGTCGACGTTGCACACCAACGATGC
GCCGCAGACCATCGCACGCTTGATGAACATGGGCATCGCGCCCTACAACATCACCTCGTCGGTGACCTTGGTGATCGCGC
AACGTCTGGCGCGGCGCTTGTGCAACAACTGCAAGCGCAAGTCGACGCTGCCTGACAACGCCTTGCTGGCCGAAGGATTC
ACGCCCGCACAGCTTGCCGCCGGGATCGAGCTGTATGAGGCGGTCGGTTGCGACGAGTGCACCGAGGGCTACAAGGGGCG
TACCGGTATCTACCAGGTCATGCCGATGACCGACGAGATCGGCGCGATCGTGCTGGAGGGCGGCAATGCGATGCAGATTG
CCGAGGCCGCGCAGGCGATCGGTATCCGCGATTTGCGGCAGTCGGCCTTGATGAAGGCTGCGCACGGGGTGACCAGCCTG
GCCGAGATCAATCGTGTAACGAAGGACTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(192-459)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(41-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baumannii D1279779

56.69

99.824

0.566
  pilB Acinetobacter baylyi ADP1

55.282

99.824

0.552
  pilB Legionella pneumophila strain ERS1305867

53.076

100

0.531
  pilF Neisseria gonorrhoeae MS11

49.824

99.824

0.497
  pilB Vibrio cholerae strain A1552

48.866

100

0.492
  pilB Vibrio parahaemolyticus RIMD 2210633

46.964

98.418

0.462
  pilB Vibrio campbellii strain DS40M4

45.694

100

0.457
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

39.13

92.97

0.364
  pilF Thermus thermophilus HB27

39.423

91.388

0.36

Multiple sequence alignment