Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | ABZP12_RS05080 | Genome accession | NZ_CP170252 |
| Coordinates | 1220669..1221931 (-) | Length | 420 a.a. |
| NCBI ID | WP_011348340.1 | Uniprot ID | Q3BQ78 |
| Organism | Xanthomonas euvesicatoria strain Xanthomonas | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1215669..1226931
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABZP12_RS05065 | - | 1218261..1218992 (-) | 732 | Protein_991 | DUF6531 domain-containing protein | - |
| ABZP12_RS05070 (ABZP12_01011) | coaE | 1219174..1219785 (-) | 612 | WP_011348341.1 | dephospho-CoA kinase | - |
| ABZP12_RS05075 (ABZP12_01012) | - | 1219799..1220662 (-) | 864 | WP_008576868.1 | A24 family peptidase | - |
| ABZP12_RS05080 (ABZP12_01013) | pilC | 1220669..1221931 (-) | 1263 | WP_011348340.1 | type II secretion system F family protein | Machinery gene |
| ABZP12_RS05085 (ABZP12_01014) | pilA | 1222273..1222701 (+) | 429 | WP_011348339.1 | pilin | Machinery gene |
| ABZP12_RS05090 (ABZP12_01015) | pilB | 1222859..1224568 (+) | 1710 | WP_175393205.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ABZP12_RS05095 (ABZP12_01017) | pilR | 1224986..1226440 (-) | 1455 | WP_042840930.1 | sigma-54 dependent transcriptional regulator | Regulator |
Sequence
Protein
Download Length: 420 a.a. Molecular weight: 46224.74 Da Isoelectric Point: 10.2689
>NTDB_id=1056091 ABZP12_RS05080 WP_011348340.1 1220669..1221931(-) (pilC) [Xanthomonas euvesicatoria strain Xanthomonas]
MSVARNAIKKQTADRSTVQQLQLFLWEGTDKRGIKMKGEQTARNMNMLRAELRRQGINPSIVKLKPKPLFGAAGKKITPK
DIAFFSRQMATMMKSGVPIVGSLEIIGEGHKNPRMKKMVGQVRTDIEGGSSLYESISRHPVQFDELYRNLVRAGEGAGVL
ETVLDTVATYKENIEALKGKIKKALFYPAMVIAVALIVSAILLIFVVPQFEEVFKGFGAELPAFTQMIVGASRFMVSYWW
IMFFVIAGAIVGFVFAYKRSPSMQHTMDRLILRVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNRVYE
DAVLRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGVV
VGGMVIGMYLPIFKLGAVVG
MSVARNAIKKQTADRSTVQQLQLFLWEGTDKRGIKMKGEQTARNMNMLRAELRRQGINPSIVKLKPKPLFGAAGKKITPK
DIAFFSRQMATMMKSGVPIVGSLEIIGEGHKNPRMKKMVGQVRTDIEGGSSLYESISRHPVQFDELYRNLVRAGEGAGVL
ETVLDTVATYKENIEALKGKIKKALFYPAMVIAVALIVSAILLIFVVPQFEEVFKGFGAELPAFTQMIVGASRFMVSYWW
IMFFVIAGAIVGFVFAYKRSPSMQHTMDRLILRVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNRVYE
DAVLRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGVV
VGGMVIGMYLPIFKLGAVVG
Nucleotide
Download Length: 1263 bp
>NTDB_id=1056091 ABZP12_RS05080 WP_011348340.1 1220669..1221931(-) (pilC) [Xanthomonas euvesicatoria strain Xanthomonas]
ATGTCTGTCGCACGCAACGCCATCAAGAAGCAAACTGCGGATCGTAGCACCGTTCAACAGCTACAGCTGTTCCTTTGGGA
AGGAACTGACAAACGCGGGATCAAGATGAAAGGCGAACAGACTGCTCGCAACATGAACATGTTGCGGGCGGAGCTTCGCC
GCCAGGGTATCAATCCATCGATAGTCAAGCTTAAGCCTAAGCCGCTGTTCGGTGCTGCAGGCAAGAAAATCACGCCAAAA
GACATCGCTTTTTTCAGCCGCCAGATGGCGACCATGATGAAATCGGGGGTGCCGATTGTAGGCTCGCTCGAGATCATCGG
TGAGGGTCACAAAAACCCGCGGATGAAAAAGATGGTGGGTCAAGTGAGAACGGATATCGAGGGAGGCTCCTCCCTTTACG
AATCAATCAGCAGACATCCGGTTCAGTTTGACGAGCTCTACCGAAACCTTGTAAGAGCAGGTGAGGGTGCAGGCGTCCTG
GAGACAGTGCTAGATACGGTTGCCACTTACAAAGAAAATATAGAAGCACTAAAGGGCAAGATCAAAAAGGCCCTATTTTA
TCCAGCCATGGTTATTGCAGTCGCCCTGATTGTCAGTGCCATCCTCCTCATCTTTGTCGTCCCTCAATTTGAGGAGGTTT
TTAAAGGTTTTGGTGCCGAGCTACCTGCTTTTACTCAAATGATTGTGGGAGCCTCACGCTTCATGGTGAGCTATTGGTGG
ATTATGTTCTTCGTCATAGCAGGCGCCATCGTCGGATTTGTCTTTGCTTATAAGCGTTCGCCAAGCATGCAGCACACTAT
GGATAGGCTTATATTGAGAGTGCCTGTCATAGGTCAAATCATGCATAACAGTTCGATTGCGCGTTTCGCGCGTACCACCG
CTGTTACCTTCAAAGCCGGCGTCCCACTGGTAGAGGCATTAGGCATTGTTGCGGGCGCCACTGGGAACCGCGTTTACGAA
GATGCTGTACTCCGCATGCGTGACGACGTATCCGTGGGATACCCTGTCAACATGGCGATGAAACAGGTGAACCTGTTTCC
ACACATGGTTATTCAAATGACTGCGATTGGTGAGGAAGCCGGCGCGCTTGATGCAATGCTCTTCAAAGTTGCTGAATACT
TTGAACAGGAGGTCAATAATGCAGTGGATGCACTTAGCAGTCTGCTCGAGCCCATGATTATGGTCTTCATCGGTGTTGTC
GTAGGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA
ATGTCTGTCGCACGCAACGCCATCAAGAAGCAAACTGCGGATCGTAGCACCGTTCAACAGCTACAGCTGTTCCTTTGGGA
AGGAACTGACAAACGCGGGATCAAGATGAAAGGCGAACAGACTGCTCGCAACATGAACATGTTGCGGGCGGAGCTTCGCC
GCCAGGGTATCAATCCATCGATAGTCAAGCTTAAGCCTAAGCCGCTGTTCGGTGCTGCAGGCAAGAAAATCACGCCAAAA
GACATCGCTTTTTTCAGCCGCCAGATGGCGACCATGATGAAATCGGGGGTGCCGATTGTAGGCTCGCTCGAGATCATCGG
TGAGGGTCACAAAAACCCGCGGATGAAAAAGATGGTGGGTCAAGTGAGAACGGATATCGAGGGAGGCTCCTCCCTTTACG
AATCAATCAGCAGACATCCGGTTCAGTTTGACGAGCTCTACCGAAACCTTGTAAGAGCAGGTGAGGGTGCAGGCGTCCTG
GAGACAGTGCTAGATACGGTTGCCACTTACAAAGAAAATATAGAAGCACTAAAGGGCAAGATCAAAAAGGCCCTATTTTA
TCCAGCCATGGTTATTGCAGTCGCCCTGATTGTCAGTGCCATCCTCCTCATCTTTGTCGTCCCTCAATTTGAGGAGGTTT
TTAAAGGTTTTGGTGCCGAGCTACCTGCTTTTACTCAAATGATTGTGGGAGCCTCACGCTTCATGGTGAGCTATTGGTGG
ATTATGTTCTTCGTCATAGCAGGCGCCATCGTCGGATTTGTCTTTGCTTATAAGCGTTCGCCAAGCATGCAGCACACTAT
GGATAGGCTTATATTGAGAGTGCCTGTCATAGGTCAAATCATGCATAACAGTTCGATTGCGCGTTTCGCGCGTACCACCG
CTGTTACCTTCAAAGCCGGCGTCCCACTGGTAGAGGCATTAGGCATTGTTGCGGGCGCCACTGGGAACCGCGTTTACGAA
GATGCTGTACTCCGCATGCGTGACGACGTATCCGTGGGATACCCTGTCAACATGGCGATGAAACAGGTGAACCTGTTTCC
ACACATGGTTATTCAAATGACTGCGATTGGTGAGGAAGCCGGCGCGCTTGATGCAATGCTCTTCAAAGTTGCTGAATACT
TTGAACAGGAGGTCAATAATGCAGTGGATGCACTTAGCAGTCTGCTCGAGCCCATGATTATGGTCTTCATCGGTGTTGTC
GTAGGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
54.408 |
94.524 |
0.514 |
| pilC | Legionella pneumophila strain ERS1305867 |
53.383 |
95 |
0.507 |
| pilC | Acinetobacter baylyi ADP1 |
51.741 |
95.714 |
0.495 |
| pilC | Acinetobacter baumannii D1279779 |
50 |
95.714 |
0.479 |
| pilG | Neisseria gonorrhoeae MS11 |
44.612 |
95 |
0.424 |
| pilG | Neisseria meningitidis 44/76-A |
44.11 |
95 |
0.419 |
| pilC | Vibrio cholerae strain A1552 |
41.5 |
95.238 |
0.395 |
| pilC | Vibrio campbellii strain DS40M4 |
39.409 |
96.667 |
0.381 |