Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABZP12_RS05095 Genome accession   NZ_CP170252
Coordinates   1224986..1226440 (-) Length   484 a.a.
NCBI ID   WP_042840930.1    Uniprot ID   -
Organism   Xanthomonas euvesicatoria strain Xanthomonas     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1219986..1231440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZP12_RS05080 (ABZP12_01013) pilC 1220669..1221931 (-) 1263 WP_011348340.1 type II secretion system F family protein Machinery gene
  ABZP12_RS05085 (ABZP12_01014) pilA 1222273..1222701 (+) 429 WP_011348339.1 pilin Machinery gene
  ABZP12_RS05090 (ABZP12_01015) pilB 1222859..1224568 (+) 1710 WP_175393205.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABZP12_RS05095 (ABZP12_01017) pilR 1224986..1226440 (-) 1455 WP_042840930.1 sigma-54 dependent transcriptional regulator Regulator
  ABZP12_RS05100 (ABZP12_01018) - 1226708..1228321 (-) 1614 WP_042840934.1 PAS domain-containing sensor histidine kinase -
  ABZP12_RS05105 (ABZP12_01019) sucC 1228553..1229722 (+) 1170 WP_007965356.1 ADP-forming succinate--CoA ligase subunit beta -
  ABZP12_RS05110 (ABZP12_01020) sucD 1229747..1230622 (+) 876 WP_011348335.1 succinate--CoA ligase subunit alpha -
  ABZP12_RS05115 (ABZP12_01021) - 1230793..1231137 (+) 345 WP_011348334.1 ribbon-helix-helix domain-containing protein -

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52521.29 Da        Isoelectric Point: 6.8289

>NTDB_id=1056094 ABZP12_RS05095 WP_042840930.1 1224986..1226440(-) (pilR) [Xanthomonas euvesicatoria strain Xanthomonas]
MGRDLLDNCRPSSRWAIVRPMNEPKSALVVDDERDIRELLVLTLSRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIAKHYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASR
LLGDSSAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRLAVPNGGAAAEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=1056094 ABZP12_RS05095 WP_042840930.1 1224986..1226440(-) (pilR) [Xanthomonas euvesicatoria strain Xanthomonas]
GTGGGCCGCGACCTGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGTCCCATGAACGAACCCAAAAGCGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGAGCCGCATGGGCTTGCGCATCAGCACCG
CGGCGAACCTGGCCGAGGCGCGCGAGTTGCTGGCCAACAACCCCTACGATCTGTGCCTGACCGACATGCGGTTGCCGGAC
GGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTACCCGCAGACGCCGGTGGCGATGATCACCGCCTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGCGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAATCGCGACCGTCCCGCTCCGCCACCGCCGCCACCGGAACAGGCCAGCCGC
CTGCTCGGGGACTCCAGTGCCATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGCAGCCAGGCGCCGGTCTACAT
CGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTCGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCG
TGCCGGTCAACTGCGGCGCCATTCCCGCCGAATTGATGGAAAGCGAATTCTTCGGCCACAAGAAGGGGAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCATGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTACCGTT
GCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGTCGGTGCGACCGGTCGGCGCATCCAGCGAATCGCTGGTGG
ATGTGCGCATCCTCTCGGCCACCCATAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCTTTCGGCATGACCTGTACTAC
CGCATCAACGTAATCGAGTTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGACCTGCCGCAGCTGGCCGCTGCCATCAT
CGCGCGCCTGGCGCACAGCCATGGCCGCCCCATTCCGCTGCTGACCCAGTCGGCGCTCGACGCATTGAATCACTACGGCT
TCCCAGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATCAGCGCCACC
GACCTGCGCCTGCCCGCTCACGGCGGCCACCGTCTGGCCGTCCCTAACGGAGGTGCCGCGGCCGAACCGCGCGAAGCCGT
CGTGGACATCGACCCGGCCTCAGCCGCGCTGCCGTCCTACATCGAGCAATTGGAGCGCGCCGCGATTCAGAAGGCGCTGG
AAGAAAACCGCTGGAACAAGACCAAGACTGCGGCGCAGCTGGGCATCACGTTTCGCGCGCTGCGTTACAAGTTGAAGAAG
CTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(162-327)

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)

Response regulator receiver domain (Response_reg)

(28-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.851

95.661

0.601
  pilR Acinetobacter baumannii strain A118

49.138

95.868

0.471

Multiple sequence alignment