Detailed information
Bioinformatically predicted
Overview
| Name | pilA2 | Type | Machinery gene |
| Locus tag | ABRP17_RS13010 | Genome accession | NZ_CP167826 |
| Coordinates | 3002574..3002993 (+) | Length | 139 a.a. |
| NCBI ID | WP_349985729.1 | Uniprot ID | - |
| Organism | Stenotrophomonas sp. WHRI 8082 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2997574..3007993
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABRP17_RS12995 (ABRP17_012995) | coaE | 2999481..3000095 (-) | 615 | WP_349985731.1 | dephospho-CoA kinase | - |
| ABRP17_RS13000 (ABRP17_013000) | pilD | 3000092..3000955 (-) | 864 | WP_192081514.1 | A24 family peptidase | Machinery gene |
| ABRP17_RS13005 (ABRP17_013005) | pilC | 3000959..3002218 (-) | 1260 | WP_349985730.1 | type II secretion system F family protein | Machinery gene |
| ABRP17_RS13010 (ABRP17_013010) | pilA2 | 3002574..3002993 (+) | 420 | WP_349985729.1 | pilin | Machinery gene |
| ABRP17_RS13015 (ABRP17_013015) | - | 3003107..3006169 (+) | 3063 | WP_349985728.1 | fused MFS/spermidine synthase | - |
Sequence
Protein
Download Length: 139 a.a. Molecular weight: 14114.49 Da Isoelectric Point: 9.5198
>NTDB_id=1039644 ABRP17_RS13010 WP_349985729.1 3002574..3002993(+) (pilA2) [Stenotrophomonas sp. WHRI 8082]
MKNQKGFTLIELMIVVAIIAILAAIALPAYQDYTARAKVSEVIVMAAPAKLAVAETASATGGLANVTVANSGYTFPGATK
YVSGITITPTTGIVTAVSTVPNATGNIVLTPTAVGTSGQLKWACSTTITNKAVVPTDCR
MKNQKGFTLIELMIVVAIIAILAAIALPAYQDYTARAKVSEVIVMAAPAKLAVAETASATGGLANVTVANSGYTFPGATK
YVSGITITPTTGIVTAVSTVPNATGNIVLTPTAVGTSGQLKWACSTTITNKAVVPTDCR
Nucleotide
Download Length: 420 bp
>NTDB_id=1039644 ABRP17_RS13010 WP_349985729.1 3002574..3002993(+) (pilA2) [Stenotrophomonas sp. WHRI 8082]
ATGAAGAATCAGAAGGGCTTCACCCTTATCGAATTGATGATCGTTGTCGCGATCATTGCCATCCTGGCCGCCATCGCTCT
GCCGGCTTACCAGGATTACACCGCACGCGCCAAGGTTTCTGAAGTGATCGTGATGGCCGCCCCGGCGAAGCTGGCTGTGG
CTGAAACCGCCTCCGCCACTGGCGGTCTGGCCAACGTGACCGTTGCTAACAGCGGTTACACCTTCCCGGGCGCCACCAAG
TACGTGTCGGGCATCACCATCACCCCGACCACCGGTATCGTCACCGCGGTGTCGACCGTCCCGAATGCGACCGGCAACAT
CGTGCTGACCCCGACGGCCGTCGGTACCAGCGGCCAGCTGAAGTGGGCTTGCAGCACCACGATTACGAACAAGGCTGTCG
TTCCGACCGATTGCCGCTAA
ATGAAGAATCAGAAGGGCTTCACCCTTATCGAATTGATGATCGTTGTCGCGATCATTGCCATCCTGGCCGCCATCGCTCT
GCCGGCTTACCAGGATTACACCGCACGCGCCAAGGTTTCTGAAGTGATCGTGATGGCCGCCCCGGCGAAGCTGGCTGTGG
CTGAAACCGCCTCCGCCACTGGCGGTCTGGCCAACGTGACCGTTGCTAACAGCGGTTACACCTTCCCGGGCGCCACCAAG
TACGTGTCGGGCATCACCATCACCCCGACCACCGGTATCGTCACCGCGGTGTCGACCGTCCCGAATGCGACCGGCAACAT
CGTGCTGACCCCGACGGCCGTCGGTACCAGCGGCCAGCTGAAGTGGGCTTGCAGCACCACGATTACGAACAAGGCTGTCG
TTCCGACCGATTGCCGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA2 | Legionella pneumophila str. Paris |
49.635 |
98.561 |
0.489 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
48.905 |
98.561 |
0.482 |
| comP | Acinetobacter baylyi ADP1 |
43.624 |
100 |
0.468 |
| pilA/pilA1 | Eikenella corrodens VA1 |
42 |
100 |
0.453 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
46.97 |
94.964 |
0.446 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
40.26 |
100 |
0.446 |
| pilE | Neisseria gonorrhoeae MS11 |
45.865 |
95.683 |
0.439 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
42.446 |
100 |
0.424 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
35.802 |
100 |
0.417 |
| pilA | Vibrio cholerae strain A1552 |
35.802 |
100 |
0.417 |
| pilA | Vibrio cholerae C6706 |
35.802 |
100 |
0.417 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
40.602 |
95.683 |
0.388 |