Detailed information NTG1039642

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABRP17_RS13000
• Genome accession: NZ_CP167826
• Coordinates: 3000092..3000955 (-)
• Length: 287 a.a.
• NCBI ID: WP_192081514.1
• Uniprot ID: -
• Organism: Stenotrophomonas sp. WHRI 8082
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	2987538..2999353	3000092..3000955	flank	739

Gene organization within MGE regions

Location: 2987538..3000955

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABRP17_RS12955 (ABRP17_012955)	-	2987538..2988383 (+)	846	WP_349985737.1	hypothetical protein	-
ABRP17_RS12960 (ABRP17_012960)	-	2988412..2991666 (-)	3255	WP_349985736.1	ATP-binding protein	-
ABRP17_RS12965 (ABRP17_012965)	rimK	2991959..2992837 (+)	879	WP_349985735.1	30S ribosomal protein S6--L-glutamate ligase	-
ABRP17_RS12970 (ABRP17_012970)	-	2993187..2993681 (+)	495	WP_349985734.1	hypothetical protein	-
ABRP17_RS12975 (ABRP17_012975)	-	2993828..2994505 (+)	678	WP_188326358.1	response regulator transcription factor	-
ABRP17_RS12980 (ABRP17_012980)	-	2994468..2995841 (+)	1374	WP_372486785.1	sensor histidine kinase	-
ABRP17_RS12985 (ABRP17_012985)	-	2995950..2996363 (-)	414	WP_349985733.1	hypothetical protein	-
ABRP17_RS12990 (ABRP17_012990)	-	2996825..2999353 (+)	2529	WP_349985732.1	hypothetical protein	-
ABRP17_RS12995 (ABRP17_012995)	coaE	2999481..3000095 (-)	615	WP_349985731.1	dephospho-CoA kinase	-
ABRP17_RS13000 (ABRP17_013000)	pilD	3000092..3000955 (-)	864	WP_192081514.1	A24 family peptidase	Machinery gene

Sequence

Protein

• Length: 287 a.a.
• Molecular weight: 31750.67 Da
• Isoelectric Point: 7.7452

>NTDB_id=1039642 ABRP17_RS13000 WP_192081514.1 3000092..3000955(-) (pilD) [Stenotrophomonas sp. WHRI 8082]
MAFLDQHPGLGFPAAAGLGLLLGSFLNVVILRLPKRLEWQWKRDAHEVLEQEDIYEPPPPGIVVEPSHCPHCKHKLAWYE
NIPLFSWLIQRGKCRHCHAPISIQYPLVELLTAVLVLASVWQFGFGWQGFGAIVLSCFLVALSGIDVRTQLLPDQLTLPL
MWLGLIGAVDNLYMPAKPALLGALVGYLSLWSVWWIFKQLTGKEGMGHGDFKLLAALGAWVGLKGILPIILLSSVVGAII
GSILLYSQGRDRATPIPFGPYLAIAGWLVFMWGEPLINAYLSYANLR

Nucleotide

• Length: 864 bp

>NTDB_id=1039642 ABRP17_RS13000 WP_192081514.1 3000092..3000955(-) (pilD) [Stenotrophomonas sp. WHRI 8082]
ATGGCATTTCTAGACCAGCATCCCGGCCTCGGCTTTCCCGCCGCGGCCGGCCTGGGGTTGTTGCTCGGCAGCTTCCTCAA
CGTCGTCATCCTGCGCCTGCCCAAGCGGCTGGAGTGGCAGTGGAAGCGTGACGCGCACGAGGTGCTGGAGCAGGAGGACA
TCTACGAGCCGCCGCCGCCTGGCATCGTGGTGGAGCCGTCGCACTGCCCGCACTGCAAGCACAAGCTGGCCTGGTACGAG
AACATCCCGCTGTTCAGCTGGCTGATCCAGCGCGGCAAGTGTCGTCATTGCCACGCCCCGATCTCCATCCAGTATCCGCT
GGTCGAGCTGCTGACCGCCGTGCTGGTGCTGGCCAGCGTGTGGCAGTTCGGCTTCGGCTGGCAGGGCTTCGGCGCCATCG
TGCTGTCGTGCTTCCTGGTGGCGCTGTCCGGCATCGACGTGCGAACGCAGCTGCTGCCGGATCAACTCACCCTGCCCTTG
ATGTGGCTGGGGCTTATAGGGGCTGTCGATAACCTGTATATGCCGGCCAAGCCTGCCCTGCTGGGTGCGCTGGTGGGCTA
TCTGTCACTGTGGTCGGTCTGGTGGATCTTCAAACAGCTGACCGGCAAGGAAGGCATGGGCCATGGCGACTTCAAGCTGC
TGGCTGCGCTGGGTGCCTGGGTGGGCCTGAAGGGCATCCTGCCGATCATCCTGCTGTCGTCGGTGGTGGGCGCGATCATC
GGCTCCATCCTGCTGTACAGCCAAGGCCGCGACCGCGCGACGCCGATCCCGTTCGGCCCCTATCTGGCGATCGCCGGCTG
GCTGGTCTTCATGTGGGGCGAGCCACTGATCAATGCCTACCTGAGTTACGCGAACCTGCGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (133-241)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-123)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50	96.167	0.481
pilD	Vibrio campbellii strain DS40M4	47.719	99.303	0.474
pilD	Acinetobacter baumannii D1279779	47.872	98.258	0.47
pilD	Acinetobacter nosocomialis M2	47.872	98.258	0.47
pilD	Neisseria gonorrhoeae MS11	44.649	94.425	0.422