Detailed information NTG1039643

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: ABRP17_RS13005
• Genome accession: NZ_CP167826
• Coordinates: 3000959..3002218 (-)
• Length: 419 a.a.
• NCBI ID: WP_349985730.1
• Uniprot ID: -
• Organism: Stenotrophomonas sp. WHRI 8082
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2995959..3007218

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABRP17_RS12990 (ABRP17_012990)	-	2996825..2999353 (+)	2529	WP_349985732.1	hypothetical protein	-
ABRP17_RS12995 (ABRP17_012995)	coaE	2999481..3000095 (-)	615	WP_349985731.1	dephospho-CoA kinase	-
ABRP17_RS13000 (ABRP17_013000)	pilD	3000092..3000955 (-)	864	WP_192081514.1	A24 family peptidase	Machinery gene
ABRP17_RS13005 (ABRP17_013005)	pilC	3000959..3002218 (-)	1260	WP_349985730.1	type II secretion system F family protein	Machinery gene
ABRP17_RS13010 (ABRP17_013010)	pilA2	3002574..3002993 (+)	420	WP_349985729.1	pilin	Machinery gene
ABRP17_RS13015 (ABRP17_013015)	-	3003107..3006169 (+)	3063	WP_349985728.1	fused MFS/spermidine synthase	-

Sequence

Protein

• Length: 419 a.a.
• Molecular weight: 45718.29 Da
• Isoelectric Point: 10.1923

>NTDB_id=1039643 ABRP17_RS13005 WP_349985730.1 3000959..3002218(-) (pilC) [Stenotrophomonas sp. WHRI 8082]
MSASRSAMKKEPVARSTMEMAPFVWEGTDKRGVKMKGEQLAKNANLLKAELRRQGITPKVVKPKTKPLFGQAGKPVSPKD
IAFFSRQMATMMKSGVPIVSALEIIGGGHKNPRMKKMVDGIRMDIEGGSSLYEAISRHPVQFDELYRNLVRAGEGAGVLE
TVLDTVANYKENIEALKGKIKKALFYPAMVIAVALIVSGILLIFVVPQFEEVFAGFGAELPAFTQMIVNLSRFMVSWWWL
IAIAIAGVIAGSIMAYKRSPKMQHTMDRLILKVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
GVLRMRDDVSVGYPVNMAMKQINLFPHMVVQMTAIGEEAGALDTMLFKVAEYFEQEVNNAVDSLSSLLEPMIMVFIGVVV
GGMVIGMYLPIFKLGAVVG

Nucleotide

• Length: 1260 bp

>NTDB_id=1039643 ABRP17_RS13005 WP_349985730.1 3000959..3002218(-) (pilC) [Stenotrophomonas sp. WHRI 8082]
ATGTCCGCAAGTCGCAGTGCGATGAAAAAAGAGCCCGTGGCGCGCAGCACCATGGAGATGGCACCGTTTGTCTGGGAGGG
GACCGACAAACGAGGCGTCAAGATGAAGGGCGAGCAGTTGGCCAAGAATGCCAACCTGCTCAAGGCAGAGCTGCGCCGCC
AAGGCATCACGCCCAAAGTGGTCAAGCCGAAGACCAAGCCCCTGTTTGGTCAGGCAGGCAAGCCAGTGTCGCCCAAGGAT
ATTGCCTTCTTCAGCCGCCAGATGGCGACGATGATGAAATCCGGCGTGCCCATTGTGTCGGCGCTCGAGATCATCGGTGG
CGGGCACAAGAACCCGCGCATGAAGAAGATGGTCGATGGCATCCGCATGGACATCGAAGGGGGCTCTTCGCTGTACGAAG
CGATCAGCCGCCATCCCGTGCAGTTCGATGAGCTCTATCGCAACCTCGTGCGTGCTGGCGAAGGGGCAGGCGTGTTGGAA
ACGGTGCTGGATACCGTTGCCAACTACAAAGAAAACATCGAGGCATTGAAGGGCAAGATCAAGAAGGCGTTGTTCTACCC
TGCCATGGTCATCGCCGTGGCGCTGATCGTGTCCGGCATTCTGCTGATCTTCGTCGTGCCGCAGTTCGAGGAAGTATTCG
CCGGGTTCGGCGCCGAACTTCCGGCATTCACCCAGATGATCGTGAATCTTTCCCGATTCATGGTCTCGTGGTGGTGGCTG
ATCGCGATCGCAATCGCGGGAGTGATCGCCGGTTCCATCATGGCCTACAAGCGCTCGCCAAAAATGCAGCACACGATGGA
CCGCCTGATCCTCAAGGTACCGGTTATCGGCCAGATCATGCACAACAGCTCGATCGCCCGCTTCGCCCGCACCACCGCCG
TCACCTTCAAGGCCGGCGTCCCGTTGGTTGAAGCCCTCGGCATCGTCGCAGGTGCTACCGGCAACAAGGTGTACGAGGAA
GGCGTGCTGCGCATGCGTGACGACGTGTCGGTCGGCTACCCGGTCAACATGGCCATGAAGCAGATCAACCTGTTCCCGCA
CATGGTGGTGCAGATGACCGCCATCGGCGAAGAGGCCGGCGCCTTGGACACCATGCTGTTCAAGGTGGCGGAGTACTTCG
AGCAAGAGGTCAACAACGCCGTCGATTCGCTCAGCAGCCTGCTGGAACCGATGATCATGGTCTTCATTGGCGTGGTCGTT
GGCGGTATGGTGATCGGCATGTACTTGCCCATCTTCAAACTCGGCGCGGTGGTTGGATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (288-410)

• Type II secretion system (T2SS), protein F (T2SSF) (84-207)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	52.709	96.897	0.511
pilC	Legionella pneumophila strain ERS1305867	52.393	94.749	0.496
pilC	Acinetobacter baumannii D1279779	52	95.465	0.496
pilC	Acinetobacter baylyi ADP1	50.739	96.897	0.492
pilG	Neisseria gonorrhoeae MS11	44.361	95.227	0.422
pilG	Neisseria meningitidis 44/76-A	43.86	95.227	0.418
pilC	Vibrio cholerae strain A1552	41.626	96.897	0.403
pilC	Vibrio campbellii strain DS40M4	40.796	95.943	0.391
pilC	Thermus thermophilus HB27	37.01	97.375	0.36