Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilAI   Type   Machinery gene
Locus tag   ABQZ61_RS17110 Genome accession   NZ_CP167246
Coordinates   3921438..3921836 (-) Length   132 a.a.
NCBI ID   WP_316687920.1    Uniprot ID   -
Organism   Xanthomonas dyei strain WHRI 64A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3904849..3950070 3921438..3921836 within 0


Gene organization within MGE regions


Location: 3904849..3950070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQZ61_RS17040 (ABQZ61_0017040) sucD 3905198..3906073 (-) 876 WP_011038208.1 succinate--CoA ligase subunit alpha -
  ABQZ61_RS17045 (ABQZ61_0017045) sucC 3906098..3907267 (-) 1170 WP_316687910.1 ADP-forming succinate--CoA ligase subunit beta -
  ABQZ61_RS17050 (ABQZ61_0017050) - 3907500..3909116 (+) 1617 WP_228325307.1 PAS domain-containing sensor histidine kinase -
  ABQZ61_RS17060 (ABQZ61_0017060) pilR 3909614..3911008 (+) 1395 WP_316692646.1 sigma-54 dependent transcriptional regulator Regulator
  ABQZ61_RS17065 (ABQZ61_0017065) pilB 3911321..3913054 (-) 1734 WP_316687911.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABQZ61_RS17070 (ABQZ61_0017070) - 3913209..3914060 (+) 852 WP_316687912.1 glycosyltransferase family 2 protein -
  ABQZ61_RS17075 (ABQZ61_0017075) - 3914112..3914972 (+) 861 WP_316687913.1 glycosyltransferase family 2 protein -
  ABQZ61_RS17080 (ABQZ61_0017080) - 3914957..3916132 (+) 1176 WP_316687914.1 glycosyltransferase -
  ABQZ61_RS17085 (ABQZ61_0017085) - 3916126..3916968 (+) 843 WP_316687915.1 glycosyltransferase -
  ABQZ61_RS17090 (ABQZ61_0017090) - 3916971..3917897 (-) 927 WP_316687916.1 glycosyltransferase family 9 protein -
  ABQZ61_RS17095 (ABQZ61_0017095) - 3918154..3918912 (-) 759 WP_316687917.1 class I SAM-dependent methyltransferase -
  ABQZ61_RS17100 (ABQZ61_0017100) - 3919036..3920856 (-) 1821 WP_316687918.1 hypothetical protein -
  ABQZ61_RS17105 (ABQZ61_0017105) - 3920915..3921337 (-) 423 WP_316687919.1 pilin -
  ABQZ61_RS17110 (ABQZ61_0017110) pilA/pilAI 3921438..3921836 (-) 399 WP_316687920.1 pilin Machinery gene
  ABQZ61_RS17115 (ABQZ61_0017115) pilC 3922187..3923449 (+) 1263 WP_316687921.1 type II secretion system F family protein Machinery gene
  ABQZ61_RS17120 (ABQZ61_0017120) - 3923456..3924319 (+) 864 WP_115513691.1 A24 family peptidase -
  ABQZ61_RS17125 (ABQZ61_0017125) coaE 3924333..3924953 (+) 621 WP_316687922.1 dephospho-CoA kinase -
  ABQZ61_RS17130 (ABQZ61_0017130) - 3925107..3929888 (+) 4782 WP_316687923.1 RHS repeat-associated core domain-containing protein -
  ABQZ61_RS17135 (ABQZ61_0017135) - 3930525..3930928 (+) 404 Protein_3273 SymE family type I addiction module toxin -
  ABQZ61_RS17140 (ABQZ61_0017140) - 3931004..3931294 (+) 291 WP_228325572.1 DUF1778 domain-containing protein -
  ABQZ61_RS17145 (ABQZ61_0017145) - 3931291..3931782 (+) 492 WP_316687924.1 GNAT family N-acetyltransferase -
  ABQZ61_RS17150 (ABQZ61_0017150) - 3931927..3933261 (-) 1335 WP_316687925.1 HAMP domain-containing sensor histidine kinase -
  ABQZ61_RS17155 (ABQZ61_0017155) - 3933254..3933931 (-) 678 WP_003490678.1 response regulator transcription factor -
  ABQZ61_RS17160 (ABQZ61_0017160) - 3933950..3934534 (-) 585 WP_316688070.1 hypothetical protein -
  ABQZ61_RS17165 (ABQZ61_0017165) rimK 3934638..3935543 (-) 906 WP_167455844.1 30S ribosomal protein S6--L-glutamate ligase -
  ABQZ61_RS17170 (ABQZ61_0017170) glgX 3936011..3938143 (+) 2133 WP_316688074.1 glycogen debranching protein GlgX -
  ABQZ61_RS17175 (ABQZ61_0017175) - 3938698..3939090 (-) 393 WP_104617555.1 H-NS family nucleoid-associated regulatory protein -
  ABQZ61_RS17180 (ABQZ61_0017180) - 3939179..3939571 (-) 393 WP_316688076.1 hypothetical protein -
  ABQZ61_RS17185 (ABQZ61_0017185) - 3940114..3940659 (-) 546 WP_104617557.1 hypothetical protein -
  ABQZ61_RS17190 (ABQZ61_0017190) - 3940829..3941113 (+) 285 WP_316688080.1 hypothetical protein -
  ABQZ61_RS17195 (ABQZ61_0017195) - 3941722..3942063 (+) 342 WP_316688082.1 hypothetical protein -
  ABQZ61_RS17200 (ABQZ61_0017200) - 3942128..3942409 (+) 282 WP_228325566.1 DUF6516 family protein -
  ABQZ61_RS17205 (ABQZ61_0017205) - 3942417..3942785 (+) 369 WP_316688084.1 transcriptional regulator -
  ABQZ61_RS17210 (ABQZ61_0017210) - 3942859..3943503 (-) 645 Protein_3288 hypothetical protein -
  ABQZ61_RS17215 (ABQZ61_0017215) - 3943564..3944666 (+) 1103 WP_316688085.1 IS3 family transposase -
  ABQZ61_RS17220 (ABQZ61_0017220) - 3944867..3945544 (+) 678 WP_316688086.1 hypothetical protein -
  ABQZ61_RS17225 (ABQZ61_0017225) - 3945766..3947256 (+) 1491 WP_316688088.1 hypothetical protein -
  ABQZ61_RS17230 (ABQZ61_0017230) - 3947575..3948384 (-) 810 WP_316688091.1 hypothetical protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 13694.95 Da        Isoelectric Point: 8.8372

>NTDB_id=1039127 ABQZ61_RS17110 WP_316687920.1 3921438..3921836(-) (pilA/pilAI) [Xanthomonas dyei strain WHRI 64A]
MKKQQGFTLIELMIVVAIIAILAAIALPMYQDYVAKSQATAGLAEITPGKTQYEVLVNEGTIPTTATQIGLTASTARCGI
AVASTGITCTLKGNAAKIQGKTISLNRDSTLGTWSCVTGNSLDPKYKPAGCS

Nucleotide


Download         Length: 399 bp        

>NTDB_id=1039127 ABQZ61_RS17110 WP_316687920.1 3921438..3921836(-) (pilA/pilAI) [Xanthomonas dyei strain WHRI 64A]
ATGAAGAAGCAGCAAGGCTTTACGCTGATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCCGCCATCGCGCT
GCCGATGTATCAGGACTATGTTGCCAAGTCGCAGGCGACTGCGGGTCTGGCAGAAATCACTCCTGGCAAGACACAGTACG
AAGTTCTCGTCAACGAGGGCACGATTCCAACCACTGCAACGCAGATTGGCTTGACGGCGAGCACTGCGCGCTGTGGTATA
GCCGTTGCTAGCACCGGCATTACCTGCACATTGAAGGGTAATGCAGCCAAGATCCAGGGCAAGACGATTAGCCTCAATCG
CGACTCCACGCTTGGCACTTGGTCGTGCGTGACTGGTAATTCCTTGGATCCCAAGTACAAGCCGGCTGGTTGCAGCTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-131)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilAI Pseudomonas stutzeri DSM 10701

57.664

100

0.598
  pilA Acinetobacter baumannii strain A118

51.064

100

0.545
  pilA/pilAII Pseudomonas stutzeri DSM 10701

48.889

100

0.5
  pilA Pseudomonas aeruginosa PAK

41.06

100

0.47
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

40.278

100

0.439
  pilA Vibrio cholerae C6706

40.278

100

0.439
  pilA Vibrio cholerae strain A1552

40.278

100

0.439
  comP Acinetobacter baylyi ADP1

38.776

100

0.432
  pilA2 Legionella pneumophila strain ERS1305867

41.606

100

0.432
  pilA2 Legionella pneumophila str. Paris

40.146

100

0.417
  pilA Vibrio parahaemolyticus RIMD 2210633

43.307

96.212

0.417
  pilE Neisseria gonorrhoeae strain FA1090

34.641

100

0.402
  pilA/pilA1 Eikenella corrodens VA1

35.57

100

0.402
  pilE Neisseria gonorrhoeae MS11

32.468

100

0.379

Multiple sequence alignment