Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA2   Type   Machinery gene
Locus tag   ACCP98_RS16005 Genome accession   NZ_CP167222
Coordinates   3674094..3674519 (-) Length   141 a.a.
NCBI ID   WP_031423879.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. fici strain NCPPB 3796     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3669094..3679519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCP98_RS15990 (ACCP98_15990) - 3670233..3671759 (-) 1527 WP_218557136.1 spermidine synthase -
  ACCP98_RS15995 (ACCP98_15995) - 3671729..3672355 (-) 627 WP_228737286.1 hypothetical protein -
  ACCP98_RS16000 (ACCP98_16000) - 3672369..3673958 (-) 1590 WP_031423877.1 phosphoethanolamine transferase -
  ACCP98_RS16005 (ACCP98_16005) pilA2 3674094..3674519 (-) 426 WP_031423879.1 pilin Machinery gene
  ACCP98_RS16010 (ACCP98_16010) pilC 3674872..3676131 (+) 1260 WP_218496974.1 type II secretion system F family protein Machinery gene
  ACCP98_RS16015 (ACCP98_16015) - 3676138..3677001 (+) 864 WP_008576868.1 A24 family peptidase -
  ACCP98_RS16020 (ACCP98_16020) coaE 3677015..3677620 (+) 606 WP_031423884.1 dephospho-CoA kinase -
  ACCP98_RS16025 (ACCP98_16025) - 3677690..3679024 (-) 1335 WP_372164232.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 14543.75 Da        Isoelectric Point: 9.0169

>NTDB_id=1038949 ACCP98_RS16005 WP_031423879.1 3674094..3674519(-) (pilA2) [Xanthomonas campestris pv. fici strain NCPPB 3796]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTTRAKLSEALTMSAPAKLAVTETASSLGGVTNVTAANSGYVFPGATK
YVSNVAITNATGRVTVTSTVPNATGDILLTPTDVGGGQLKWTCSSAINTKYLPAECRNSGT

Nucleotide


Download         Length: 426 bp        

>NTDB_id=1038949 ACCP98_RS16005 WP_031423879.1 3674094..3674519(-) (pilA2) [Xanthomonas campestris pv. fici strain NCPPB 3796]
ATGAAGAAGCAGCAAGGCTTTACACTTATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCTGCCATCGCGCT
GCCGGCTTATCAGGACTACACCACTCGCGCCAAGCTCAGTGAAGCGCTGACGATGTCGGCGCCTGCCAAGCTTGCGGTAA
CTGAGACTGCATCGTCGCTCGGCGGTGTTACTAATGTTACTGCTGCGAATTCGGGCTACGTATTCCCGGGTGCCACGAAG
TATGTCAGCAATGTCGCCATCACCAATGCAACGGGTCGCGTCACTGTGACCTCCACGGTGCCCAACGCTACCGGTGACAT
CCTGCTGACCCCGACTGATGTCGGTGGTGGCCAGCTGAAGTGGACCTGCTCTTCCGCCATCAACACCAAGTACCTGCCGG
CGGAGTGCCGTAACTCGGGCACCTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila strain ERS1305867

52.857

99.291

0.525
  pilA2 Legionella pneumophila str. Paris

52.857

99.291

0.525
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

35.45

100

0.475
  pilE Neisseria gonorrhoeae MS11

39.264

100

0.454
  pilA Ralstonia pseudosolanacearum GMI1000

39.024

100

0.454
  comP Acinetobacter baylyi ADP1

42.177

100

0.44
  pilA/pilA1 Eikenella corrodens VA1

40.667

100

0.433
  pilE Neisseria gonorrhoeae strain FA1090

37.423

100

0.433
  pilA/pilAI Pseudomonas stutzeri DSM 10701

42.754

97.872

0.418
  pilA/pilAII Pseudomonas stutzeri DSM 10701

42.222

95.745

0.404
  pilA Pseudomonas aeruginosa PAK

36.364

100

0.397
  pilA Acinetobacter baumannii strain A118

38.194

100

0.39
  pilA Haemophilus influenzae 86-028NP

42.149

85.816

0.362

Multiple sequence alignment