Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACCP98_RS16010 Genome accession   NZ_CP167222
Coordinates   3674872..3676131 (+) Length   419 a.a.
NCBI ID   WP_218496974.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. fici strain NCPPB 3796     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3669872..3681131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCP98_RS15990 (ACCP98_15990) - 3670233..3671759 (-) 1527 WP_218557136.1 spermidine synthase -
  ACCP98_RS15995 (ACCP98_15995) - 3671729..3672355 (-) 627 WP_228737286.1 hypothetical protein -
  ACCP98_RS16000 (ACCP98_16000) - 3672369..3673958 (-) 1590 WP_031423877.1 phosphoethanolamine transferase -
  ACCP98_RS16005 (ACCP98_16005) pilA2 3674094..3674519 (-) 426 WP_031423879.1 pilin Machinery gene
  ACCP98_RS16010 (ACCP98_16010) pilC 3674872..3676131 (+) 1260 WP_218496974.1 type II secretion system F family protein Machinery gene
  ACCP98_RS16015 (ACCP98_16015) - 3676138..3677001 (+) 864 WP_008576868.1 A24 family peptidase -
  ACCP98_RS16020 (ACCP98_16020) coaE 3677015..3677620 (+) 606 WP_031423884.1 dephospho-CoA kinase -
  ACCP98_RS16025 (ACCP98_16025) - 3677690..3679024 (-) 1335 WP_372164232.1 sensor histidine kinase -
  ACCP98_RS16030 (ACCP98_16030) - 3679017..3679694 (-) 678 WP_003490678.1 response regulator transcription factor -
  ACCP98_RS16035 (ACCP98_16035) - 3679720..3680163 (-) 444 WP_071118754.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45959.43 Da        Isoelectric Point: 10.2301

>NTDB_id=1038950 ACCP98_RS16010 WP_218496974.1 3674872..3676131(+) (pilC) [Xanthomonas campestris pv. fici strain NCPPB 3796]
MSIARSAIKKQPVDRSTSMLQTFIWEGADKRGVKMKGEQTARNANMLRAELRRQGIVPSMVKQKPKPLFGAAGKKVTPKD
IAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQIRTDIEGGSSLYESVSKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKALFYPAMVVAVAIIVSAILLIFVVPQFEEVFKSFGAELPAFTQLLVNASRFMVSYWWL
MLVVAVGSVVGFIFAYKRSPRMQHGLDRLILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKLYEE
AVFRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEEEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1038950 ACCP98_RS16010 WP_218496974.1 3674872..3676131(+) (pilC) [Xanthomonas campestris pv. fici strain NCPPB 3796]
ATGTCAATCGCGCGTAGCGCCATCAAGAAACAACCGGTCGACCGGAGCACCAGCATGCTACAGACCTTCATTTGGGAAGG
GGCTGACAAGCGTGGCGTGAAGATGAAGGGAGAGCAGACAGCCCGTAACGCCAATATGTTGCGAGCAGAGCTGCGCCGTC
AGGGCATTGTGCCCAGCATGGTGAAGCAAAAGCCGAAGCCTCTGTTCGGAGCGGCGGGGAAGAAAGTTACCCCCAAAGAC
ATCGCGTTCTTTAGCCGCCAGATGGCGACGATGATGAAGTCGGGCGTGCCCATCGTCAGTTCGTTGGAGATCATTGGCGA
GGGACACAAAAACCCACGCATGAAAAAAATGGTCGGCCAGATCAGGACAGACATCGAGGGGGGATCCTCGCTCTATGAGT
CCGTCAGCAAACATCCCGTTCAGTTTGACGAGCTCTACCGCAACCTTGTCCGCGCGGGCGAAGGTGCTGGCGTTCTGGAG
ACAGTCCTCGACACGGTTGCTACCTACAAAGAAAACATTGAAGCCCTAAAGGGCAAGATCAAAAAGGCATTGTTCTACCC
TGCCATGGTGGTTGCGGTGGCAATTATCGTGAGTGCGATTTTGCTCATCTTCGTGGTGCCTCAGTTCGAAGAAGTATTCA
AGAGCTTCGGTGCTGAACTACCGGCATTCACTCAGCTCCTCGTCAACGCATCGCGCTTCATGGTCAGCTATTGGTGGTTG
ATGCTGGTAGTCGCGGTTGGATCTGTCGTTGGCTTCATCTTTGCCTACAAACGTTCTCCACGGATGCAGCATGGACTTGA
TCGATTGATCCTCAAGGTGCCCGTAATCGGGCAGATCATGCACAACAGTGCGATTGCACGCTTTGCACGGACAACTGCAG
TGACATTCAAGGCAGGCGTTCCTCTAGTGGAGGCACTTGGGATCGTAGCTGGCGCTACTGGCAATAAGCTTTATGAGGAG
GCTGTTTTCAGGATGCGGGACGATGTGTCTGTGGGTTACCCGGTCAACATGGCGATGAAACAGGTGAACCTATTTCCACA
TATGGTTATTCAAATGACTGCGATTGGCGAAGAGGCCGGCGCGCTTGATGCAATGCTCTTCAAAGTGGCTGAATACTTTG
AGGAAGAGGTCAATAATGCCGTGGACGCACTCAGCAGTCTGCTTGAACCACTGATCATGGTGTTCATCGGCACCATCGTC
GGTGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.202

96.897

0.516
  pilC Pseudomonas stutzeri DSM 10701

53.535

94.511

0.506
  pilC Acinetobacter baylyi ADP1

51.111

96.659

0.494
  pilC Acinetobacter baumannii D1279779

50.864

96.659

0.492
  pilG Neisseria gonorrhoeae MS11

43.609

95.227

0.415
  pilG Neisseria meningitidis 44/76-A

43.108

95.227

0.411
  pilC Vibrio cholerae strain A1552

40.75

95.465

0.389
  pilC Vibrio campbellii strain DS40M4

39.25

95.465

0.375

Multiple sequence alignment