Detailed information
Bioinformatically predicted
Overview
| Name | pilA/pilAI | Type | Machinery gene |
| Locus tag | ABK042_RS20990 | Genome accession | NZ_CP166454 |
| Coordinates | 4517195..4517602 (+) | Length | 135 a.a. |
| NCBI ID | WP_024956772.1 | Uniprot ID | - |
| Organism | Stenotrophomonas maltophilia strain 1945B | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4512195..4522602
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABK042_RS20965 (ABK042_20955) | - | 4512987..4513373 (+) | 387 | WP_049452339.1 | hypothetical protein | - |
| ABK042_RS20970 (ABK042_20960) | coaE | 4513499..4514110 (-) | 612 | WP_049452340.1 | dephospho-CoA kinase | - |
| ABK042_RS20975 (ABK042_20965) | - | 4514122..4514985 (-) | 864 | WP_005410800.1 | A24 family peptidase | - |
| ABK042_RS20980 (ABK042_20970) | pilC | 4514993..4516252 (-) | 1260 | WP_049452341.1 | type II secretion system F family protein | Machinery gene |
| ABK042_RS20985 (ABK042_20975) | - | 4516605..4517042 (+) | 438 | WP_024956771.1 | pilin | - |
| ABK042_RS20990 (ABK042_20980) | pilA/pilAI | 4517195..4517602 (+) | 408 | WP_024956772.1 | pilin | Machinery gene |
| ABK042_RS20995 (ABK042_20985) | pilB | 4517826..4519559 (+) | 1734 | WP_005410796.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ABK042_RS21000 (ABK042_20990) | pilR | 4519686..4521059 (-) | 1374 | WP_049452342.1 | sigma-54 dependent transcriptional regulator | Regulator |
Sequence
Protein
Download Length: 135 a.a. Molecular weight: 14252.43 Da Isoelectric Point: 6.2109
>NTDB_id=1034557 ABK042_RS20990 WP_024956772.1 4517195..4517602(+) (pilA/pilAI) [Stenotrophomonas maltophilia strain 1945B]
MNTQKGFTLIELMIVVAIIAILAAIAAVAFQPYVVRTQLAAALADITPGKTKVEILVNENRPASLITPEFIGGAQNAHCS
NVEAELSDSGVGHISCTLKGHSALDGKDLILRRSAEGIWSCDGSAFEARYRPTGC
MNTQKGFTLIELMIVVAIIAILAAIAAVAFQPYVVRTQLAAALADITPGKTKVEILVNENRPASLITPEFIGGAQNAHCS
NVEAELSDSGVGHISCTLKGHSALDGKDLILRRSAEGIWSCDGSAFEARYRPTGC
Nucleotide
Download Length: 408 bp
>NTDB_id=1034557 ABK042_RS20990 WP_024956772.1 4517195..4517602(+) (pilA/pilAI) [Stenotrophomonas maltophilia strain 1945B]
ATGAACACGCAGAAGGGCTTCACGCTCATCGAACTGATGATCGTGGTGGCCATCATCGCCATCCTTGCGGCGATTGCGGC
TGTGGCATTTCAGCCATACGTCGTGCGCACCCAGTTGGCGGCGGCACTTGCGGATATCACGCCGGGAAAGACCAAGGTGG
AAATCCTCGTCAACGAGAACCGTCCGGCCAGTCTGATCACCCCCGAGTTCATCGGTGGCGCCCAGAACGCCCACTGCTCC
AACGTCGAAGCCGAACTCAGCGATTCCGGCGTCGGCCATATCAGCTGCACCTTGAAGGGACACAGCGCGCTGGACGGCAA
GGACCTGATCCTGCGCCGCTCCGCCGAGGGCATCTGGAGCTGCGATGGCAGCGCGTTCGAAGCGCGCTATCGCCCGACCG
GCTGCTGA
ATGAACACGCAGAAGGGCTTCACGCTCATCGAACTGATGATCGTGGTGGCCATCATCGCCATCCTTGCGGCGATTGCGGC
TGTGGCATTTCAGCCATACGTCGTGCGCACCCAGTTGGCGGCGGCACTTGCGGATATCACGCCGGGAAAGACCAAGGTGG
AAATCCTCGTCAACGAGAACCGTCCGGCCAGTCTGATCACCCCCGAGTTCATCGGTGGCGCCCAGAACGCCCACTGCTCC
AACGTCGAAGCCGAACTCAGCGATTCCGGCGTCGGCCATATCAGCTGCACCTTGAAGGGACACAGCGCGCTGGACGGCAA
GGACCTGATCCTGCGCCGCTCCGCCGAGGGCATCTGGAGCTGCGATGGCAGCGCGTTCGAAGCGCGCTATCGCCCGACCG
GCTGCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
50.735 |
100 |
0.511 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
43.382 |
100 |
0.437 |
| pilA | Pseudomonas aeruginosa PAK |
38.255 |
100 |
0.422 |
| pilA | Acinetobacter baumannii strain A118 |
40.876 |
100 |
0.415 |
| comP | Acinetobacter baylyi ADP1 |
35.57 |
100 |
0.393 |
| pilA | Vibrio cholerae C6706 |
34.694 |
100 |
0.378 |
| pilA | Vibrio cholerae strain A1552 |
34.694 |
100 |
0.378 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
34.694 |
100 |
0.378 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
36.842 |
98.519 |
0.363 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
35.507 |
100 |
0.363 |