Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABK042_RS20980 Genome accession   NZ_CP166454
Coordinates   4514993..4516252 (-) Length   419 a.a.
NCBI ID   WP_049452341.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain 1945B     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4509993..4521252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABK042_RS20950 (ABK042_20940) - 4510003..4510473 (+) 471 WP_005410805.1 hypothetical protein -
  ABK042_RS20955 (ABK042_20945) - 4510482..4511159 (+) 678 WP_005410804.1 response regulator transcription factor -
  ABK042_RS20960 (ABK042_20950) - 4511164..4512492 (+) 1329 WP_005410803.1 HAMP domain-containing sensor histidine kinase -
  ABK042_RS20965 (ABK042_20955) - 4512987..4513373 (+) 387 WP_049452339.1 hypothetical protein -
  ABK042_RS20970 (ABK042_20960) coaE 4513499..4514110 (-) 612 WP_049452340.1 dephospho-CoA kinase -
  ABK042_RS20975 (ABK042_20965) - 4514122..4514985 (-) 864 WP_005410800.1 A24 family peptidase -
  ABK042_RS20980 (ABK042_20970) pilC 4514993..4516252 (-) 1260 WP_049452341.1 type II secretion system F family protein Machinery gene
  ABK042_RS20985 (ABK042_20975) - 4516605..4517042 (+) 438 WP_024956771.1 pilin -
  ABK042_RS20990 (ABK042_20980) pilA/pilAI 4517195..4517602 (+) 408 WP_024956772.1 pilin Machinery gene
  ABK042_RS20995 (ABK042_20985) pilB 4517826..4519559 (+) 1734 WP_005410796.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABK042_RS21000 (ABK042_20990) pilR 4519686..4521059 (-) 1374 WP_049452342.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45902.33 Da        Isoelectric Point: 10.1071

>NTDB_id=1034556 ABK042_RS20980 WP_049452341.1 4514993..4516252(-) (pilC) [Stenotrophomonas maltophilia strain 1945B]
MSVSRSAIKKEPVARATMELQPFVWEGTDKRGVKMKGEQLAKNANLLRAELRRQGINPGQVKPKSKPLFGAAGSPVKPKD
IAFFSRQMATMMKSGVPIVSALDIIASGHKNPRMKKLVDTIRTDIEGGSSMYEAVSKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKALFYPIMVVVVAMLVSGIMLVFVVPQFEDVFKSFGAELPAFTQLVVNLSRFMVSWWWL
MLLVAIGTAVALVMSYKRSPKMQHAMDRFVLKVPVIGQIMHNSAIARFSRTTAVTFKAGVPLVEALGIVAGATGNTVYEE
AVLRMRDDVSVGYPVNMSMKQTNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNSVDALSSLLEPMIMVFIGTIV
GGMVIAMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1034556 ABK042_RS20980 WP_049452341.1 4514993..4516252(-) (pilC) [Stenotrophomonas maltophilia strain 1945B]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAAGAGCCGGTGGCGCGTGCCACCATGGAGCTGCAGCCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGCGTGAAGATGAAGGGCGAGCAGCTGGCCAAGAACGCCAACCTGCTGCGCGCCGAGCTGCGCCGCC
AAGGCATCAACCCGGGCCAGGTCAAGCCGAAGTCGAAGCCGCTGTTCGGCGCTGCCGGCAGCCCGGTCAAGCCCAAGGAC
ATCGCCTTCTTCAGCCGGCAGATGGCCACGATGATGAAATCCGGCGTGCCGATCGTGTCGGCGCTGGACATCATCGCCAG
CGGGCACAAGAACCCGCGGATGAAGAAGCTGGTCGACACCATCCGCACCGACATCGAGGGCGGTTCCTCGATGTACGAAG
CAGTCAGCAAGCACCCGGTGCAGTTCGACGAGCTGTACCGCAACCTGGTGCGGGCCGGCGAAGGCGCCGGCGTGCTGGAA
ACCGTGCTGGACACGGTGGCCACCTACAAGGAAAACATCGAAGCGCTGAAGGGCAAGATCAAGAAAGCGCTGTTCTACCC
GATCATGGTGGTCGTGGTGGCCATGCTGGTCAGCGGCATCATGCTGGTGTTCGTGGTGCCGCAGTTCGAGGACGTGTTCA
AGAGCTTCGGCGCCGAGCTGCCCGCCTTCACCCAGCTGGTGGTGAACCTCTCAAGATTCATGGTGTCGTGGTGGTGGCTG
ATGCTGCTGGTCGCGATCGGTACAGCGGTCGCTCTGGTCATGTCCTACAAGCGCTCGCCGAAGATGCAGCATGCAATGGA
CCGGTTCGTGCTGAAGGTGCCGGTGATCGGGCAGATCATGCACAACAGTGCCATCGCCCGCTTCTCGCGCACCACCGCGG
TGACCTTCAAGGCCGGCGTGCCGCTGGTGGAGGCGTTGGGCATCGTGGCCGGCGCCACCGGCAATACCGTGTACGAAGAG
GCGGTGCTGCGCATGCGCGACGACGTCTCGGTGGGTTACCCGGTGAACATGTCGATGAAGCAGACCAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGCGAAGAGGCCGGTGCGCTGGACGCCATGCTGTTCAAGGTGGCCGAGTACTATG
AGCAGGAGGTCAACAATTCGGTGGATGCCCTGAGCAGCCTGCTGGAGCCGATGATCATGGTGTTCATTGGTACCATTGTG
GGCGGCATGGTGATTGCCATGTACCTTCCCATCTTCAAACTCGGCGCCGTCGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.798

94.511

0.518
  pilC Acinetobacter baylyi ADP1

51.597

97.136

0.501
  pilC Legionella pneumophila strain ERS1305867

51.88

95.227

0.494
  pilC Acinetobacter baumannii D1279779

49.631

97.136

0.482
  pilG Neisseria gonorrhoeae MS11

44.888

95.704

0.43
  pilG Neisseria meningitidis 44/76-A

44.638

95.704

0.427
  pilC Vibrio cholerae strain A1552

41.872

96.897

0.406
  pilC Vibrio campbellii strain DS40M4

41.397

95.704

0.396
  pilC Thermus thermophilus HB27

37.811

95.943

0.363

Multiple sequence alignment