Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABK042_RS21000 Genome accession   NZ_CP166454
Coordinates   4519686..4521059 (-) Length   457 a.a.
NCBI ID   WP_049452342.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain 1945B     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4514686..4526059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABK042_RS20980 (ABK042_20970) pilC 4514993..4516252 (-) 1260 WP_049452341.1 type II secretion system F family protein Machinery gene
  ABK042_RS20985 (ABK042_20975) - 4516605..4517042 (+) 438 WP_024956771.1 pilin -
  ABK042_RS20990 (ABK042_20980) pilA/pilAI 4517195..4517602 (+) 408 WP_024956772.1 pilin Machinery gene
  ABK042_RS20995 (ABK042_20985) pilB 4517826..4519559 (+) 1734 WP_005410796.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABK042_RS21000 (ABK042_20990) pilR 4519686..4521059 (-) 1374 WP_049452342.1 sigma-54 dependent transcriptional regulator Regulator
  ABK042_RS21005 (ABK042_20995) - 4521120..4522733 (-) 1614 WP_005410794.1 PAS domain-containing sensor histidine kinase -
  ABK042_RS21010 (ABK042_21000) sucC 4523091..4524260 (+) 1170 WP_049452343.1 ADP-forming succinate--CoA ligase subunit beta -
  ABK042_RS21015 (ABK042_21005) sucD 4524282..4525157 (+) 876 WP_005410793.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49502.76 Da        Isoelectric Point: 6.4407

>NTDB_id=1034559 ABK042_RS21000 WP_049452342.1 4519686..4521059(-) (pilR) [Stenotrophomonas maltophilia strain 1945B]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNAERPAPGPNAEQGGRLLGHSQAMDVLRTTIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPGELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAATEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELKVPPLRERRQDLPE
LAAAVLARLARSHGRATPLLAPSALEALAQYAFPGNVRELENILERALALAEEDCIGADDLRLPQHAPRAPGSAAPAEAV
ADLQPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=1034559 ABK042_RS21000 WP_049452342.1 4519686..4521059(-) (pilR) [Stenotrophomonas maltophilia strain 1945B]
ATGAATGAAACCCGCAGCGCCCTCGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTGCTGACCCTCGGCCGCAT
GGGGCTGCGCATCAGTACCGCCGCCAACCTGGCCGAGGCACGTGAGCTGCTGGCCAGCAATCCGTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGATGGCAACGGCATCGAGCTGGTCAGCGAGATTGCCCAGCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCATTCGGCAGCATGGATCTCGCCGTGGAGGCGCTGAAGGCCGGTGCGTTCGATTTCGTCAGCAAGCCGGT
GGACATCTCGGTGCTGCGCGGACTGGTCAAGCACGCGCTGGAACTCAACAACGCCGAGCGCCCCGCACCGGGCCCCAACG
CCGAACAGGGCGGACGCCTGCTGGGCCACTCGCAGGCCATGGATGTGCTGCGCACCACCATCGGCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCCTCGGCGAGTCGGGCGTCGGCAAGGAGCTGGTTGCACGCACCATCCATGCCCAGGGCGCGCG
CGCGGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGGCGAGCTGATGGAGAGCGAATTCTTCGGCCACCGCA
AGGGCAGTTTCAGCGGCGCACACGCTGACAAGCCTGGCCTGTTCCAGGCTGCGCACGGCGGCACCCTGTTCCTGGACGAA
GTGGCTGAACTGCCGCTGCAGATGCAGGTGAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGCGCGGTGGGCGCGGC
CACCGAGGAGCCGGTGGATGTCCGCATCCTCTCGGCCACCCATAAGGACCTGGCCGAGCTGGTCGAGGACGGGCGCTTCC
GCCACGACCTGTACTACCGCATCAACGTGATCGAACTGAAGGTGCCGCCACTGCGCGAACGCCGCCAGGACCTGCCCGAA
CTGGCCGCCGCCGTGCTGGCCCGCCTGGCCCGCAGCCACGGCCGCGCCACCCCGCTGCTGGCGCCCTCGGCGCTGGAAGC
CCTGGCGCAGTACGCGTTCCCGGGCAATGTGCGCGAGCTGGAGAACATCCTGGAACGTGCGCTGGCCCTGGCCGAGGAAG
ACTGCATCGGCGCCGATGACCTGCGCCTGCCACAGCACGCGCCGCGTGCTCCCGGCAGTGCGGCGCCCGCCGAAGCGGTG
GCCGACCTGCAGCCGGGCAGCGCTGCCCTGCCCTCCTACATCGAGCAGCTCGAGCGCAGCGCCATCCAGCGTGCGCTGGA
AGAGAACCGCTGGAACAAGACCCGTACCGCCGCGCAGCTGGGCATCACCTTCCGTGCGCTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(414-454)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Response regulator receiver domain (Response_reg)

(8-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.656

99.344

0.632
  pilR Acinetobacter baumannii strain A118

48.38

100

0.49
  luxO Vibrio cholerae strain A1552

37.079

97.374

0.361

Multiple sequence alignment