Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilAI   Type   Machinery gene
Locus tag   AB3X07_RS06075 Genome accession   NZ_CP162488
Coordinates   1422458..1422859 (+) Length   133 a.a.
NCBI ID   WP_369943544.1    Uniprot ID   -
Organism   Xanthomonas medicagonis strain DAR 35659     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1417458..1427859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3X07_RS06055 (AB3X07_06050) - 1417878..1419212 (+) 1335 WP_369943540.1 sensor histidine kinase -
  AB3X07_RS06060 (AB3X07_06055) coaE 1419308..1419928 (-) 621 WP_369943541.1 dephospho-CoA kinase -
  AB3X07_RS06065 (AB3X07_06060) - 1419941..1420804 (-) 864 WP_369943542.1 prepilin peptidase -
  AB3X07_RS06070 (AB3X07_06065) pilC 1420811..1422070 (-) 1260 WP_369943543.1 type II secretion system F family protein Machinery gene
  AB3X07_RS06075 (AB3X07_06070) pilA/pilAI 1422458..1422859 (+) 402 WP_369943544.1 pilin Machinery gene
  AB3X07_RS06080 (AB3X07_06075) - 1422936..1423358 (+) 423 WP_369943545.1 pilin -
  AB3X07_RS06085 (AB3X07_06080) - 1423408..1425300 (+) 1893 WP_369943546.1 hypothetical protein -
  AB3X07_RS06090 (AB3X07_06085) - 1425397..1426557 (+) 1161 WP_369943547.1 DegT/DnrJ/EryC1/StrS family aminotransferase -
  AB3X07_RS06095 (AB3X07_06090) - 1426543..1427778 (-) 1236 WP_369943548.1 hypothetical protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 13866.81 Da        Isoelectric Point: 8.8697

>NTDB_id=1026429 AB3X07_RS06075 WP_369943544.1 1422458..1422859(+) (pilA/pilAI) [Xanthomonas medicagonis strain DAR 35659]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQNYVRKSQVTAALSDITPGKTQFEVKINEGSGFGTTGSAIGLQDTTSRCS
AIAVNPSDTGSITCTMIGGAGVGGNTIAWTRNSSGNWRCSTTADAKYRPSTCQ

Nucleotide


Download         Length: 402 bp        

>NTDB_id=1026429 AB3X07_RS06075 WP_369943544.1 1422458..1422859(+) (pilA/pilAI) [Xanthomonas medicagonis strain DAR 35659]
ATGAAGAAGCAGCAGGGCTTTACCCTGATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCCGCCATCGCGCT
GCCGGCTTACCAGAACTACGTGCGCAAGTCGCAGGTCACTGCGGCGCTGTCCGACATCACTCCGGGCAAGACGCAGTTCG
AAGTCAAGATCAACGAAGGTAGTGGCTTTGGCACCACTGGTAGTGCTATTGGCCTGCAGGACACGACTAGCCGTTGCTCT
GCCATTGCTGTTAACCCGAGCGACACTGGTAGCATCACTTGCACCATGATTGGCGGCGCAGGTGTAGGTGGAAATACGAT
TGCTTGGACGCGCAACAGCTCCGGTAACTGGCGCTGCTCTACCACCGCTGATGCCAAGTATCGTCCTAGCACCTGTCAGT
AA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(36-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilAI Pseudomonas stutzeri DSM 10701

53.731

100

0.541
  pilA Pseudomonas aeruginosa PAK

42.568

100

0.474
  pilA/pilAII Pseudomonas stutzeri DSM 10701

46.617

100

0.466
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

41.549

100

0.444
  pilA Vibrio cholerae strain A1552

41.549

100

0.444
  pilA Vibrio cholerae C6706

41.549

100

0.444
  pilA Acinetobacter baumannii strain A118

42.336

100

0.436
  comP Acinetobacter baylyi ADP1

38.356

100

0.421
  pilE Neisseria gonorrhoeae MS11

34.615

100

0.406
  pilA Vibrio parahaemolyticus RIMD 2210633

41.085

96.992

0.398
  pilA/pilA1 Eikenella corrodens VA1

35.099

100

0.398
  pilA2 Legionella pneumophila str. Paris

38.06

100

0.383
  pilA2 Legionella pneumophila strain ERS1305867

38.06

100

0.383

Multiple sequence alignment