Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AB3X07_RS06070 Genome accession   NZ_CP162488
Coordinates   1420811..1422070 (-) Length   419 a.a.
NCBI ID   WP_369943543.1    Uniprot ID   -
Organism   Xanthomonas medicagonis strain DAR 35659     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1415811..1427070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3X07_RS06045 (AB3X07_06040) - 1416735..1417193 (+) 459 WP_369943539.1 hypothetical protein -
  AB3X07_RS06050 (AB3X07_06045) - 1417208..1417885 (+) 678 WP_369944666.1 response regulator transcription factor -
  AB3X07_RS06055 (AB3X07_06050) - 1417878..1419212 (+) 1335 WP_369943540.1 sensor histidine kinase -
  AB3X07_RS06060 (AB3X07_06055) coaE 1419308..1419928 (-) 621 WP_369943541.1 dephospho-CoA kinase -
  AB3X07_RS06065 (AB3X07_06060) - 1419941..1420804 (-) 864 WP_369943542.1 prepilin peptidase -
  AB3X07_RS06070 (AB3X07_06065) pilC 1420811..1422070 (-) 1260 WP_369943543.1 type II secretion system F family protein Machinery gene
  AB3X07_RS06075 (AB3X07_06070) pilA/pilAI 1422458..1422859 (+) 402 WP_369943544.1 pilin Machinery gene
  AB3X07_RS06080 (AB3X07_06075) - 1422936..1423358 (+) 423 WP_369943545.1 pilin -
  AB3X07_RS06085 (AB3X07_06080) - 1423408..1425300 (+) 1893 WP_369943546.1 hypothetical protein -
  AB3X07_RS06090 (AB3X07_06085) - 1425397..1426557 (+) 1161 WP_369943547.1 DegT/DnrJ/EryC1/StrS family aminotransferase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45646.93 Da        Isoelectric Point: 10.1825

>NTDB_id=1026428 AB3X07_RS06070 WP_369943543.1 1420811..1422070(-) (pilC) [Xanthomonas medicagonis strain DAR 35659]
MSATRSAVSKQPVARGTSQQVPFVWEGTDKRGVKMKGEQTAKNANLLRAELRRQGITPSVVKPKPKPLFGAAGSKITPKD
IAFFSRQMATMMKSGVPIVGSLEIIASGHKNPRMKKMVDQVRTDIEGGSSLYEAISKHPVQFDELYRNLVKAGEGAGVLE
TVLETVATYKENIEALKGKIKKALFYPAMVMAVALLVSSILLVWVVPQFEDVFKGFGAELPAFTQMIVAASRFMVAYWWI
LLLVLVGTIVGFIFAYKRSPSMQHGMDRLILKVPIIGQIMHNSSVARFSRTLGVTFRAGVPLVEALDIVAGATGNSVYEK
SVLRMRDDVAVGYPVNVAMKQANLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIV
GGMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1026428 AB3X07_RS06070 WP_369943543.1 1420811..1422070(-) (pilC) [Xanthomonas medicagonis strain DAR 35659]
ATGTCCGCAACTCGTAGCGCAGTATCCAAACAGCCCGTGGCGCGCGGCACCAGCCAGCAGGTGCCGTTCGTCTGGGAAGG
GACGGACAAGCGCGGCGTCAAGATGAAGGGCGAGCAGACCGCCAAGAACGCCAACCTGCTGCGCGCGGAGTTGCGCCGCC
AGGGCATCACGCCCTCGGTGGTCAAACCCAAGCCCAAGCCGCTCTTCGGTGCCGCCGGTAGCAAGATCACCCCGAAAGAC
ATCGCGTTTTTCAGCCGCCAGATGGCGACCATGATGAAGTCCGGCGTCCCGATCGTGGGGTCGCTGGAGATCATCGCCAG
CGGGCACAAGAATCCGCGCATGAAGAAGATGGTGGACCAGGTCCGTACCGACATCGAGGGCGGCTCCTCGCTCTACGAGG
CGATCAGCAAGCATCCCGTCCAGTTCGACGAGCTCTACCGCAACCTGGTCAAGGCCGGCGAAGGCGCCGGTGTGCTCGAA
ACCGTGCTGGAAACGGTCGCGACGTACAAGGAAAACATCGAAGCGCTGAAGGGCAAGATCAAGAAGGCCTTGTTCTACCC
GGCCATGGTCATGGCGGTCGCGCTGCTGGTCAGCTCGATCCTGCTGGTCTGGGTGGTGCCGCAGTTCGAGGACGTATTCA
AGGGCTTCGGTGCGGAGTTGCCGGCATTTACGCAGATGATCGTCGCCGCATCGCGCTTCATGGTCGCCTATTGGTGGATC
CTGTTGCTTGTCCTGGTCGGCACCATCGTCGGCTTCATCTTTGCCTACAAGCGCTCGCCGTCGATGCAGCACGGCATGGA
CCGGCTGATCCTGAAGGTGCCGATCATCGGCCAGATCATGCACAACAGTTCGGTGGCGCGCTTCTCGCGGACGCTGGGCG
TCACCTTCCGCGCCGGCGTCCCGCTGGTCGAGGCGCTGGACATCGTCGCCGGCGCCACTGGCAACAGCGTCTACGAGAAA
TCCGTGCTGCGCATGCGTGACGACGTCGCCGTCGGTTACCCGGTCAACGTCGCGATGAAGCAGGCCAACCTGTTTCCGCA
TATGGTCATCCAGATGACGGCCATTGGCGAAGAGGCTGGTGCGCTGGATGCGATGCTGTTCAAGGTGGCCGAGTACTTCG
AGCAGGAAGTGAACAATGCGGTCGATGCGCTGAGCAGCCTGATCGAGCCATTGATCATGGTCTTCATCGGCACCATCGTC
GGCGGCATGGTCATCGGCATGTACCTGCCCATCTTCAAGCTGGCCTCCGTCGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.03

94.511

0.501
  pilC Legionella pneumophila strain ERS1305867

52.778

94.511

0.499
  pilC Acinetobacter baylyi ADP1

51.225

97.375

0.499
  pilC Acinetobacter baumannii D1279779

51.613

96.181

0.496
  pilG Neisseria meningitidis 44/76-A

42.25

95.465

0.403
  pilG Neisseria gonorrhoeae MS11

42.462

94.988

0.403
  pilC Vibrio cholerae strain A1552

41.481

96.659

0.401
  pilC Vibrio campbellii strain DS40M4

40.302

94.749

0.382

Multiple sequence alignment