Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   AACH29_RS00725 Genome accession   NZ_AP027239
Coordinates   145443..145748 (+) Length   101 a.a.
NCBI ID   WP_016171026.1    Uniprot ID   -
Organism   Lactococcus garvieae strain L21-12     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 140443..150748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH29_RS00705 (LG21E12_01350) guaB 141555..143036 (+) 1482 WP_003133714.1 IMP dehydrogenase -
  AACH29_RS00710 (LG21E12_01360) rpsU 143159..143335 (+) 177 WP_003134539.1 30S ribosomal protein S21 -
  AACH29_RS00715 (LG21E12_01370) comGA 143522..144466 (+) 945 WP_265150863.1 competence type IV pilus ATPase ComGA Machinery gene
  AACH29_RS00720 (LG21E12_01380) comGB 144405..145424 (+) 1020 WP_016171027.1 competence type IV pilus assembly protein ComGB Machinery gene
  AACH29_RS00725 (LG21E12_01390) comYC 145443..145748 (+) 306 WP_016171026.1 competence type IV pilus major pilin ComGC Machinery gene
  AACH29_RS00730 comGD 145723..146139 (+) 417 WP_014024177.1 competence type IV pilus minor pilin ComGD Machinery gene
  AACH29_RS00735 comGE 146171..146404 (+) 234 WP_229031266.1 competence type IV pilus minor pilin ComGE -
  AACH29_RS00740 (LG21E12_01410) comYF 146385..146825 (+) 441 WP_014024179.1 competence type IV pilus minor pilin ComGF Machinery gene
  AACH29_RS00745 (LG21E12_01420) - 147058..147903 (+) 846 WP_023889974.1 zinc ABC transporter substrate-binding protein -
  AACH29_RS00750 (LG21E12_01430) - 147989..148858 (-) 870 WP_023889973.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11397.28 Da        Isoelectric Point: 9.9218

>NTDB_id=100199 AACH29_RS00725 WP_016171026.1 145443..145748(+) (comYC) [Lactococcus garvieae strain L21-12]
MEKKRFKAFTLIEMLVVLLIISVLLLLFVPNLSKEKKNIQNTGQTAVVKVVEGQAELYQLDKQDSPSLGKLVSGGLITQK
QADSYNDYYTKNPNEKRNVPN

Nucleotide


Download         Length: 306 bp        

>NTDB_id=100199 AACH29_RS00725 WP_016171026.1 145443..145748(+) (comYC) [Lactococcus garvieae strain L21-12]
ATGGAAAAAAAGAGGTTCAAAGCTTTTACTTTGATTGAAATGCTTGTCGTCTTACTTATTATCAGTGTCTTACTTTTATT
GTTTGTCCCAAATTTGTCTAAAGAAAAGAAGAATATCCAAAATACGGGTCAAACAGCGGTTGTTAAAGTTGTCGAAGGTC
AAGCCGAACTTTATCAACTTGATAAACAGGATAGTCCTAGCTTAGGGAAACTTGTCTCCGGTGGGTTAATTACACAGAAA
CAAGCCGATAGCTACAATGATTATTATACTAAGAACCCAAATGAAAAACGTAATGTACCGAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus gordonii str. Challis substr. CH1

62.745

100

0.634
  comYC Streptococcus mutans UA140

67.368

94.059

0.634
  comYC Streptococcus mutans UA159

67.368

94.059

0.634
  comGC Lactococcus lactis subsp. cremoris KW2

62

99.01

0.614
  comGC/cglC Streptococcus mitis SK321

61.616

98.02

0.604
  comGC/cglC Streptococcus pneumoniae Rx1

57.576

98.02

0.564
  comGC/cglC Streptococcus pneumoniae D39

57.576

98.02

0.564
  comGC/cglC Streptococcus pneumoniae TIGR4

57.576

98.02

0.564
  comGC/cglC Streptococcus pneumoniae R6

57.576

98.02

0.564
  comGC/cglC Streptococcus mitis NCTC 12261

61.538

90.099

0.554
  comYC Streptococcus suis isolate S10

58.025

80.198

0.465
  comGC Staphylococcus aureus MW2

49.367

78.218

0.386
  comGC Staphylococcus aureus N315

49.367

78.218

0.386

Multiple sequence alignment