Detailed information NTG0100198

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: BAMY6639_RS12945
• Genome accession: NZ_CP006058
• Coordinates: 2677318..2678448 (+)
• Length: 376 a.a.
• NCBI ID: WP_061861167.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens UMAF6639
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2672318..2683448

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAMY6639_RS12920 (BAMY6639_13560)	-	2672561..2673007 (+)	447	WP_061861166.1	NUDIX hydrolase	-
BAMY6639_RS12925 (BAMY6639_13565)	-	2673065..2674786 (+)	1722	WP_014304370.1	pyruvate oxidase	-
BAMY6639_RS20900	-	2675290..2675553 (+)	264	Protein_2564	peptidoglycan-binding domain-containing protein	-
BAMY6639_RS12935 (BAMY6639_13575)	-	2675589..2676146 (-)	558	WP_025649978.1	hypothetical protein	-
BAMY6639_RS12940 (BAMY6639_13580)	-	2676210..2676659 (-)	450	WP_025649977.1	hypothetical protein	-
BAMY6639_RS12945 (BAMY6639_13585)	rapC	2677318..2678448 (+)	1131	WP_061861167.1	Rap family tetratricopeptide repeat protein	Regulator
BAMY6639_RS20730 (BAMY6639_13590)	-	2678448..2678582 (+)	135	WP_254922222.1	hypothetical protein	-
BAMY6639_RS20545 (BAMY6639_13595)	-	2678941..2679171 (-)	231	WP_033575060.1	hypothetical protein	-
BAMY6639_RS12955 (BAMY6639_13605)	-	2679551..2680108 (-)	558	WP_061861168.1	hypothetical protein	-
BAMY6639_RS20380 (BAMY6639_13610)	-	2680204..2680821 (-)	618	WP_226998543.1	hypothetical protein	-
BAMY6639_RS12965 (BAMY6639_13615)	-	2681005..2681271 (-)	267	WP_014416946.1	hypothetical protein	-
BAMY6639_RS12970 (BAMY6639_13620)	-	2681377..2682654 (-)	1278	WP_088056325.1	Nramp family divalent metal transporter	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44652.01 Da
• Isoelectric Point: 5.1955

>NTDB_id=100198 BAMY6639_RS12945 WP_061861167.1 2677318..2678448(+) (rapC) [Bacillus amyloliquefaciens UMAF6639]
MDQVLPSSQVGVKINEWYKMIRQFSVPDAEILKAEVEQEIEEMEEDQDLLVFYSLMCFRHQLMLDSLEPEDRYRDRPTVD
ELLEKIEKPQKRLTGLLKYYSLFFRGMYEFDHKEYVEAIGYYRKAERELNAVSDEMEQAEFHYKIADAYYQIDQHFVSLN
HLKKAKQLFEKNQLYKVKVIGCNMMVGANMYDMYRLTEAESYYREALSIARGLDEEKVKRIIGVIFHNLGLVYLRGENLI
AAEENFKKAIDVKEHIDTVYGVRSLYMMANVLYQCDKAKEARFFYETALNRARTSNEEEYLAKLKIINSLYEEYNETAVK
QSLGYLEEKRLWSDFAELTEKLGDFHFEKRNYAEGRNFLKKTIHAQTQILKVTEAI

Nucleotide

• Length: 1131 bp

>NTDB_id=100198 BAMY6639_RS12945 WP_061861167.1 2677318..2678448(+) (rapC) [Bacillus amyloliquefaciens UMAF6639]
ATGGATCAAGTTTTGCCGTCGTCCCAAGTTGGTGTCAAGATCAATGAATGGTACAAAATGATTCGCCAGTTCAGTGTGCC
TGATGCTGAGATTTTAAAGGCTGAAGTCGAACAGGAAATAGAGGAGATGGAAGAGGATCAGGATTTGCTTGTCTTTTATT
CATTGATGTGCTTTCGTCACCAATTGATGTTAGATTCCTTGGAGCCGGAAGACAGATATCGAGATCGCCCCACAGTCGAC
GAACTACTTGAAAAAATAGAAAAGCCGCAAAAAAGACTTACAGGCCTCTTGAAGTATTACTCATTATTTTTTCGTGGAAT
GTATGAATTTGATCATAAAGAGTATGTTGAAGCGATAGGCTATTATCGCAAAGCAGAGAGAGAGTTGAATGCTGTATCAG
ATGAAATGGAGCAAGCTGAATTTCATTACAAAATAGCTGATGCCTATTATCAAATTGATCAGCACTTTGTTTCCCTCAAT
CATTTGAAAAAAGCCAAGCAATTGTTTGAAAAAAATCAATTATACAAAGTGAAAGTGATTGGCTGTAATATGATGGTCGG
TGCTAACATGTACGATATGTACAGGCTGACGGAGGCAGAATCATATTATCGGGAAGCATTAAGTATCGCCCGTGGGTTGG
ATGAGGAAAAAGTGAAAAGGATTATCGGAGTGATCTTTCATAACTTAGGCTTAGTTTATTTAAGAGGGGAAAATTTGATT
GCTGCTGAAGAGAATTTCAAAAAGGCAATAGACGTGAAAGAACATATTGATACAGTGTATGGTGTGAGATCATTATATAT
GATGGCAAATGTCCTGTACCAATGTGATAAAGCCAAGGAAGCACGTTTCTTTTATGAAACGGCTTTAAATCGTGCTCGGA
CTTCTAATGAAGAAGAATATTTGGCGAAATTAAAAATCATTAATTCATTATACGAAGAATATAATGAAACAGCAGTGAAA
CAAAGCTTAGGTTACTTGGAAGAGAAACGCCTTTGGTCTGATTTCGCAGAGCTAACCGAAAAATTAGGTGACTTTCATTT
TGAGAAGAGAAACTATGCAGAGGGAAGAAACTTTTTAAAGAAAACCATACATGCCCAAACACAAATACTTAAGGTTACGG
AGGCTATATAA

Domains

Predicted by InterProScan.

• MalT-like TPR region (TPR_MalT) (146-296)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	37.534	99.202	0.372