Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   BAMY6639_RS12880 Genome accession   NZ_CP006058
Coordinates   2660334..2660768 (+) Length   144 a.a.
NCBI ID   WP_007410180.1    Uniprot ID   A7Z1H0
Organism   Bacillus amyloliquefaciens UMAF6639     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2655334..2665768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY6639_RS12845 (BAMY6639_13485) - 2655591..2656094 (+) 504 WP_014416931.1 D-lyxose/D-mannose family sugar isomerase -
  BAMY6639_RS12850 (BAMY6639_13490) - 2656182..2656805 (+) 624 WP_014416932.1 GNAT family N-acetyltransferase -
  BAMY6639_RS12855 (BAMY6639_13495) - 2656812..2657234 (+) 423 WP_029974297.1 pyridoxamine 5'-phosphate oxidase family protein -
  BAMY6639_RS12860 (BAMY6639_13500) - 2657732..2658541 (+) 810 WP_014416933.1 lipid II flippase Amj family protein -
  BAMY6639_RS12875 (BAMY6639_13515) - 2659868..2660158 (-) 291 WP_007410179.1 DUF3817 domain-containing protein -
  BAMY6639_RS12880 (BAMY6639_13520) lrpC 2660334..2660768 (+) 435 WP_007410180.1 Lrp/AsnC family transcriptional regulator Machinery gene
  BAMY6639_RS12885 (BAMY6639_13525) - 2660832..2663018 (+) 2187 WP_061861510.1 DNA topoisomerase III -
  BAMY6639_RS12890 (BAMY6639_13530) - 2663252..2664337 (+) 1086 WP_061861163.1 hypothetical protein -
  BAMY6639_RS12895 (BAMY6639_13535) - 2664318..2665166 (+) 849 WP_014416937.1 diguanylate cyclase domain-containing protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16492.13 Da        Isoelectric Point: 8.6776

>NTDB_id=100197 BAMY6639_RS12880 WP_007410180.1 2660334..2660768(+) (lrpC) [Bacillus amyloliquefaciens UMAF6639]
MKLDNVDLSIIKELQRDSRLSMRELGRKIKLSAPSVTERVRQLESFGVIKRYTLDIDQKKIGLPVSCIVEATVKNGKYDQ
FKTYIQSIPNIEFCFRVAGAACYMLKMNADSLETIEHFINRTSPYAQTVTHVIFSEIDTKNVLD

Nucleotide


Download         Length: 435 bp        

>NTDB_id=100197 BAMY6639_RS12880 WP_007410180.1 2660334..2660768(+) (lrpC) [Bacillus amyloliquefaciens UMAF6639]
ATGAAACTAGATAATGTGGATCTGAGCATCATTAAAGAGCTGCAGCGGGACAGCCGCCTGTCCATGCGGGAACTGGGCAG
AAAAATCAAATTGTCAGCCCCGTCCGTCACAGAGCGTGTCAGACAGCTTGAATCCTTCGGCGTCATTAAGCGCTATACAT
TGGACATTGATCAAAAAAAGATCGGGCTTCCTGTTTCCTGCATTGTCGAAGCGACAGTGAAAAACGGAAAATACGATCAA
TTTAAAACCTACATTCAATCCATTCCCAACATTGAATTTTGTTTTCGGGTCGCCGGGGCGGCGTGTTATATGCTGAAGAT
GAACGCGGACAGCCTGGAAACGATCGAACACTTCATCAACCGCACCTCTCCGTATGCCCAAACCGTGACCCACGTCATTT
TCTCAGAAATTGACACAAAAAACGTCCTCGATTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(69-135)

AsnC-type helix-turn-helix domain (HTH_AsnC-type)

(3-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z1H0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

80.851

97.917

0.792

Multiple sequence alignment