Detailed information NTG1001017

Bioinformatically predicted

Overview

• Name: comP
• Type: Machinery gene
• Locus tag: ABFU29_RS16420
• Genome accession: NZ_CP156001
• Coordinates: 3704949..3705362 (-)
• Length: 137 a.a.
• NCBI ID: WP_323548210.1
• Uniprot ID: -
• Organism: Xanthomonas campestris pv. raphani strain bglFP 6753
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	3698034..3708481	3704949..3705362	within	0

Gene organization within MGE regions

Location: 3698034..3708481

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABFU29_RS16390 (ABFU29_16365)	-	3698034..3698396 (+)	363	WP_148263072.1	hypothetical protein	-
ABFU29_RS16395 (ABFU29_16370)	-	3698341..3699132 (+)	792	WP_407462317.1	toxin	-
ABFU29_RS16400 (ABFU29_16375)	pilB	3699315..3701048 (-)	1734	WP_323539949.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABFU29_RS16405 (ABFU29_16380)	-	3701083..3702609 (-)	1527	WP_323541664.1	hypothetical protein	-
ABFU29_RS16410 (ABFU29_16385)	-	3702579..3703208 (-)	630	WP_323548213.1	hypothetical protein	-
ABFU29_RS16415 (ABFU29_16390)	-	3703219..3704730 (-)	1512	WP_407463088.1	phosphoethanolamine transferase	-
ABFU29_RS16420 (ABFU29_16395)	comP	3704949..3705362 (-)	414	WP_323548210.1	pilin	Machinery gene
ABFU29_RS16425 (ABFU29_16400)	pilC	3705715..3706974 (+)	1260	WP_323548209.1	type II secretion system F family protein	Machinery gene
ABFU29_RS16430 (ABFU29_16405)	-	3706981..3707844 (+)	864	WP_323548208.1	A24 family peptidase	-
ABFU29_RS16435 (ABFU29_16410)	coaE	3707858..3708481 (+)	624	WP_076038488.1	dephospho-CoA kinase	-

Sequence

Protein

• Length: 137 a.a.
• Molecular weight: 14036.15 Da
• Isoelectric Point: 8.4883

>NTDB_id=1001017 ABFU29_RS16420 WP_323548210.1 3704949..3705362(-) (comP) [Xanthomonas campestris pv. raphani strain bglFP 6753]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTIRSRVSEMAVLASGAKATIGENIANENAINANACRGVATFTTATTN
TASLACSNGTITVTGTSKAASVVLTYAPTLVDAGIRWTCSSASAAKYLPAECRGSGT

Nucleotide

• Length: 414 bp

>NTDB_id=1001017 ABFU29_RS16420 WP_323548210.1 3704949..3705362(-) (comP) [Xanthomonas campestris pv. raphani strain bglFP 6753]
ATGAAGAAGCAGCAAGGCTTTACACTTATCGAACTGATGATCGTTGTGGCGATCATTGCAATCCTGGCCGCCATCGCGTT
GCCGGCTTATCAGGATTACACCATCCGCTCGCGTGTCTCTGAAATGGCTGTGCTCGCCTCCGGTGCCAAGGCGACAATTG
GTGAGAATATTGCCAATGAGAATGCGATTAATGCTAATGCGTGCCGTGGAGTTGCTACGTTTACTACCGCCACGACAAAC
ACTGCTTCCCTGGCGTGTTCCAACGGAACTATCACTGTCACTGGTACGAGTAAGGCTGCAAGCGTCGTTCTGACCTACGC
TCCGACCCTTGTGGACGCTGGCATCAGGTGGACCTGTTCGTCTGCCAGTGCGGCTAAGTACCTGCCGGCCGAATGCCGCG
GTTCGGGCACCTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (1-27)

• Pilin (bacterial filament) (Pilin) (36-133)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comP	Acinetobacter baylyi ADP1	48.98	100	0.526
pilA	Ralstonia pseudosolanacearum GMI1000	42.945	100	0.511
pilA2	Legionella pneumophila str. Paris	50	97.81	0.489
pilA2	Legionella pneumophila strain ERS1305867	49.254	97.81	0.482
pilA/pilAI	Pseudomonas stutzeri DSM 10701	41.007	100	0.416
pilA/pilA1	Eikenella corrodens VA1	37.748	100	0.416
pilE	Neisseria gonorrhoeae strain FA1090	36.364	100	0.409
pilE	Neisseria gonorrhoeae MS11	36.129	100	0.409
pilA	Haemophilus influenzae 86-028NP	39.568	100	0.401
pilA	Vibrio parahaemolyticus RIMD 2210633	43.2	91.241	0.394
pilA	Acinetobacter baumannii strain A118	36.986	100	0.394
pilA	Haemophilus influenzae Rd KW20	38.129	100	0.387
pilA/pilAII	Pseudomonas stutzeri DSM 10701	35.135	100	0.38