Detailed information NTG1000563

Bioinformatically predicted

Overview

• Name: pilA2
• Type: Machinery gene
• Locus tag: ABFU43_RS05040
• Genome accession: NZ_CP155975
• Coordinates: 1198144..1198575 (+)
• Length: 143 a.a.
• NCBI ID: WP_043922199.1
• Uniprot ID: -
• Organism: Xanthomonas campestris pv. raphani strain 0539
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1193144..1203575

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABFU43_RS05010 (ABFU43_05015)	-	1193541..1194032 (-)	492	WP_011038220.1	GNAT family N-acetyltransferase	-
ABFU43_RS05015 (ABFU43_05020)	-	1194029..1194319 (-)	291	WP_014508712.1	DUF1778 domain-containing protein	-
ABFU43_RS05020 (ABFU43_05025)	-	1194394..1194795 (-)	402	WP_274341704.1	SymE family type I addiction module toxin	-
ABFU43_RS05025 (ABFU43_05030)	coaE	1195031..1195654 (-)	624	WP_076038488.1	dephospho-CoA kinase	-
ABFU43_RS05030 (ABFU43_05035)	-	1195668..1196531 (-)	864	WP_011038216.1	A24 family peptidase	-
ABFU43_RS05035 (ABFU43_05040)	-	1196538..1197795 (-)	1258	Protein_975	type II secretion system F family protein	-
ABFU43_RS05040 (ABFU43_05045)	pilA2	1198144..1198575 (+)	432	WP_043922199.1	pilin	Machinery gene
ABFU43_RS05045 (ABFU43_05050)	pilB	1198713..1200449 (+)	1737	WP_043921911.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABFU43_RS05050 (ABFU43_05055)	-	1200632..1201423 (-)	792	WP_202796265.1	toxin	-
ABFU43_RS05055 (ABFU43_05060)	-	1201368..1201730 (-)	363	WP_148263072.1	hypothetical protein	-
ABFU43_RS05060 (ABFU43_05065)	pilR	1201922..1203316 (-)	1395	WP_274341705.1	sigma-54 dependent transcriptional regulator	Regulator

Sequence

Protein

• Length: 143 a.a.
• Molecular weight: 14758.07 Da
• Isoelectric Point: 9.0331

>NTDB_id=1000563 ABFU43_RS05040 WP_043922199.1 1198144..1198575(+) (pilA2) [Xanthomonas campestris pv. raphani strain 0539]
MKKQQGFTLIELMIVIAIIAILAAIALPAYQDYTIRSKVSETMIAMSAAKLAVAETAQSQGILATAVTNNTAAGYSGQTT
DKVASVVIANGVVTGTSKNTGAKVEPILKLTPTQADKDSPITWACSYTAGEAKHVPASCRTAG

Nucleotide

• Length: 432 bp

>NTDB_id=1000563 ABFU43_RS05040 WP_043922199.1 1198144..1198575(+) (pilA2) [Xanthomonas campestris pv. raphani strain 0539]
ATGAAAAAGCAGCAAGGTTTTACTCTTATTGAATTGATGATTGTTATTGCCATCATCGCGATCCTAGCCGCCATTGCTCT
TCCGGCATATCAGGATTACACCATTCGAAGCAAAGTCAGCGAAACCATGATTGCTATGTCTGCAGCTAAGCTGGCGGTAG
CTGAGACTGCCCAGTCTCAAGGTATTCTGGCAACTGCCGTTACTAACAACACCGCCGCTGGATACTCCGGGCAAACTACC
GATAAGGTAGCGAGCGTGGTCATTGCCAATGGTGTGGTCACCGGTACTTCCAAGAACACTGGCGCAAAAGTTGAGCCGAT
CTTGAAGCTTACCCCCACGCAGGCTGATAAAGACTCGCCGATTACATGGGCTTGCAGCTACACCGCTGGTGAAGCTAAGC
ATGTCCCGGCAAGCTGCCGTACCGCTGGCTGA

Domains

Predicted by InterproScan.

• Pilin (bacterial filament) (Pilin) (36-140)

• Prokaryotic N-terminal methylation motif (N_methyl) (1-27)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA2	Legionella pneumophila str. Paris	51.02	100	0.524
pilA2	Legionella pneumophila strain ERS1305867	50.34	100	0.517
pilE	Neisseria elongata subsp. glycolytica ATCC 29315	38.378	100	0.496
comP	Acinetobacter baylyi ADP1	42.767	100	0.476
pilE	Neisseria gonorrhoeae strain FA1090	40.764	100	0.448
pilA	Ralstonia pseudosolanacearum GMI1000	37.952	100	0.441
pilE	Neisseria gonorrhoeae MS11	39.873	100	0.441
pilA/pilAI	Pseudomonas stutzeri DSM 10701	40.559	100	0.406
pilA	Haemophilus influenzae 86-028NP	39.716	98.601	0.392
pilA	Haemophilus influenzae Rd KW20	38.462	100	0.385
pilA/pilA1	Eikenella corrodens VA1	36	100	0.378
pilA	Vibrio cholerae C6706	35.811	100	0.371
pilA	Vibrio cholerae strain A1552	35.811	100	0.371
pilA	Vibrio cholerae O1 biovar El Tor strain E7946	35.811	100	0.371