Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   ABFU13_RS05290 Genome accession   NZ_CP155943
Coordinates   1240242..1240655 (+) Length   137 a.a.
NCBI ID   WP_012437602.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. campestris strain MBG-63.1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1235242..1245655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU13_RS05260 (ABFU13_05260) - 1235338..1235829 (-) 492 WP_011038220.1 GNAT family N-acetyltransferase -
  ABFU13_RS05265 (ABFU13_05265) - 1235826..1236116 (-) 291 WP_011038219.1 DUF1778 domain-containing protein -
  ABFU13_RS05270 (ABFU13_05270) - 1236191..1236592 (-) 402 WP_012437599.1 SymE family type I addiction module toxin -
  ABFU13_RS05275 (ABFU13_05275) coaE 1237124..1237747 (-) 624 WP_011038217.1 dephospho-CoA kinase -
  ABFU13_RS05280 (ABFU13_05280) - 1237761..1238624 (-) 864 WP_012437600.1 A24 family peptidase -
  ABFU13_RS05285 (ABFU13_05285) pilC 1238631..1239890 (-) 1260 WP_012437601.1 type II secretion system F family protein Machinery gene
  ABFU13_RS05290 (ABFU13_05290) comP 1240242..1240655 (+) 414 WP_012437602.1 pilin Machinery gene
  ABFU13_RS05295 (ABFU13_05295) - 1240874..1242385 (+) 1512 WP_256729490.1 phosphoethanolamine transferase -
  ABFU13_RS05300 (ABFU13_05300) - 1242396..1243025 (+) 630 WP_012437604.1 hypothetical protein -
  ABFU13_RS05305 (ABFU13_05305) - 1242995..1244521 (+) 1527 WP_016944997.1 membrane protein -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 14030.15 Da        Isoelectric Point: 8.4883

>NTDB_id=1000001 ABFU13_RS05290 WP_012437602.1 1240242..1240655(+) (comP) [Xanthomonas campestris pv. campestris strain MBG-63.1]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTIRSRVSEMAVLASGAKATIGENIANENAINANACRGVATFNTATTN
TASLACANGTVTVTGTAKAANVVLTYAPTLVDAGIRWTCSSASAAKYLPAECRGSGT

Nucleotide


Download         Length: 414 bp        

>NTDB_id=1000001 ABFU13_RS05290 WP_012437602.1 1240242..1240655(+) (comP) [Xanthomonas campestris pv. campestris strain MBG-63.1]
ATGAAGAAGCAGCAAGGCTTTACACTTATCGAACTGATGATCGTGGTCGCGATCATCGCTATCCTGGCCGCCATCGCGCT
GCCGGCTTATCAGGATTACACCATTCGCTCGCGTGTCTCTGAAATGGCTGTGCTCGCCTCCGGTGCCAAGGCGACAATTG
GTGAGAATATTGCCAATGAGAATGCGATTAATGCTAATGCGTGCCGCGGAGTTGCTACTTTTAACACCGCCACGACGAAC
ACTGCTTCCCTCGCGTGTGCCAACGGTACTGTCACTGTCACTGGTACGGCTAAGGCTGCGAACGTCGTTCTGACCTACGC
TCCGACCCTTGTGGACGCTGGCATCAGGTGGACCTGTTCGTCTGCCAGTGCGGCTAAGTACCTGCCGGCCGAATGCCGTG
GTTCGGGCACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-133)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Acinetobacter baylyi ADP1

48.322

100

0.526
  pilA Ralstonia pseudosolanacearum GMI1000

42.945

100

0.511
  pilA2 Legionella pneumophila str. Paris

50.746

97.81

0.496
  pilA2 Legionella pneumophila strain ERS1305867

50

97.81

0.489
  pilA/pilA1 Eikenella corrodens VA1

39.073

100

0.431
  pilE Neisseria gonorrhoeae strain FA1090

37.662

100

0.423
  pilA/pilAI Pseudomonas stutzeri DSM 10701

41.007

100

0.416
  pilE Neisseria gonorrhoeae MS11

36.774

100

0.416
  pilA Vibrio parahaemolyticus RIMD 2210633

43.2

91.241

0.394
  pilA Pseudomonas aeruginosa PAK

35.333

100

0.387
  pilA Acinetobacter baumannii strain A118

36.301

100

0.387
  pilA Haemophilus influenzae Rd KW20

38.129

100

0.387
  pilA Haemophilus influenzae 86-028NP

38.129

100

0.387
  pilA/pilAII Pseudomonas stutzeri DSM 10701

37.41

100

0.38

Multiple sequence alignment