Detailed information of TA system TA092505

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): /BrnT(toxin)
• Location: 331975..332473
• Replicon: chromosome
• Accession: NZ_CP025937
• Organism: Vibrio cholerae strain A1552

Toxin (Protein)

• Gene name: -
• Uniprot ID: Q9KMK7
• Locus tag: C1H56_RS15840
• Protein ID: WP_000589156.1
• Coordinates: 331975..332241 (+)
• Length: 89 a.a.

Antitoxin (Protein)

• Gene name: -
• Uniprot ID: Q9KMK6
• Locus tag: C1H56_RS15845
• Protein ID: WP_000643598.1
• Coordinates: 332228..332473 (+)
• Length: 82 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
C1H56_RS19835	327395..327601	+	207	Protein_290	DUF3709 domain-containing protein	-
C1H56_RS15785	327801..327902	+	102	WP_001921603.1	hypothetical protein	-
C1H56_RS15790	327892..328278	+	387	WP_000703163.1	VOC family protein	-
C1H56_RS15795	328473..328724	+	252	WP_001890111.1	TIGR03643 family protein	-
C1H56_RS15800	328697..328846	+	150	WP_071908333.1	DUF3265 domain-containing protein	-
C1H56_RS15805	328938..329180	+	243	WP_000107461.1	hypothetical protein	-
C1H56_RS15810	329387..329710	+	324	WP_001890134.1	DUF3709 domain-containing protein	-
C1H56_RS19945	330085..330228	+	144	Protein_297	DUF645 family protein	-
C1H56_RS19950	330282..330320	+	39	WP_082798268.1	hypothetical protein	-
C1H56_RS15825	330532..330999	+	468	WP_001289288.1	OsmC family protein	-
C1H56_RS15830	331127..331790	+	664	Protein_300	hypothetical protein	-
C1H56_RS15840	331975..332241	+	267	WP_000589156.1	BrnT family toxin	Toxin
C1H56_RS15845	332228..332473	+	246	WP_000643598.1	hypothetical protein	Antitoxin
C1H56_RS15850	332569..333363	+	795	WP_001911581.1	hypothetical protein	-
C1H56_RS19955	333466..333594	+	129	WP_071908338.1	general secretion pathway protein GspI	-
C1H56_RS15865	333655..333837	+	183	WP_000923182.1	DUF645 family protein	-
C1H56_RS15870	334053..335057	+	1005	WP_000964920.1	LD-carboxypeptidase	-
C1H56_RS15875	335210..335569	+	360	WP_001071541.1	VOC family protein	-
C1H56_RS15880	335842..336075	+	234	WP_001890112.1	DUF3709 domain-containing protein	-
C1H56_RS15885	336343..336849	+	507	WP_000393074.1	hypothetical protein	-
C1H56_RS15890	337006..337392	+	387	WP_000703163.1	VOC family protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	Genomic island	catB9	-	304067..433328	129261
	Similar MGE(s) Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE. Detail Genome accession Organism MGE type Related TA Coordinates Mash distance View NC_002506 Vibrio cholerae O1 biovar El Tor str. N16961 Integron TA000164, TA000169, TA000166, TA000167, TA000179, TA000170, TA000171, TA000172, TA000173, TA000174, TA000175, TA000176, TA000177, TA000178, TA000168, TA000165, TA010030, TA010035 309750..435387 0	inside	Integron	catB9	-	309147..432952	123805

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Ribonuclease toxin, BrnT, of type II toxin-antitoxin system (6-81)

Antitoxin

No domain identified.

Sequences

Toxin

Protein

• Length: 89 a.a.
• Molecular weight: 10092.34 Da
• Isoelectric Point: 7.3171

>T92505 WP_000589156.1 NZ_CP025937:331975-332241 [Vibrio cholerae]
MIKFEFDENKSRSNLEKHGIDFHTAQGLWNDSDLIEIPANTSDEPRYLVVGLLNGKHWSGVITYRGTNIRIISVRRSRKA
EVSLYESA

Nucleotide

• Length: 267 bp

>T92505 NZ_CP025937:331975-332241 [Vibrio cholerae]
ATGATTAAATTTGAATTTGATGAAAACAAAAGCAGAAGTAATCTCGAAAAGCACGGTATTGATTTTCATACAGCTCAAGG
ATTGTGGAATGATTCAGATCTTATCGAGATCCCTGCTAACACGAGTGATGAGCCCAGATATTTGGTTGTCGGCTTACTAA
ACGGTAAGCATTGGTCAGGAGTAATTACCTACCGAGGTACGAATATCAGGATCATCTCAGTTCGGCGTTCACGGAAAGCG
GAGGTAAGCCTTTATGAAAGCGCATGA

Antitoxin

Protein

• Length: 82 a.a.
• Molecular weight: 9478.77 Da
• Isoelectric Point: 6.4832

>AT92505 WP_000643598.1 NZ_CP025937:332228-332473 [Vibrio cholerae]
MKAHEFDAKFESDDDDIVMDLDLSQAKRPMHKQKRVNVDFPAWMLESLDREASRIGVTRQSIIKIWLAERLESVSHHSSV
R

Nucleotide

• Length: 246 bp

>AT92505 NZ_CP025937:332228-332473 [Vibrio cholerae]
ATGAAAGCGCATGAATTTGATGCCAAGTTTGAAAGTGACGACGATGATATCGTAATGGACTTGGATCTATCGCAAGCTAA
AAGACCGATGCATAAGCAAAAACGAGTCAATGTAGATTTTCCAGCCTGGATGCTTGAGTCCTTGGACAGAGAAGCGAGTC
GTATTGGTGTAACACGTCAATCAATCATTAAAATTTGGCTGGCAGAAAGGTTAGAGAGCGTGTCTCATCATTCAAGTGTG
AGATAA

Structures

Toxin

• AlphaFold DB: A0A271VMP7

Antitoxin

• AlphaFold DB: A0A271VME2