Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | /GNAT-DUF1778 |
Location | 858197..858963 | Replicon | chromosome |
Accession | NZ_CP020407 | ||
Organism | Vibrio cholerae strain FDAARGOS_223 |
Toxin (Protein)
Gene name | - | Uniprot ID | Q9K2P7 |
Locus tag | A6J62_RS04515 | Protein ID | WP_000982260.1 |
Coordinates | 858466..858963 (+) | Length | 166 a.a. |
Antitoxin (Protein)
Gene name | - | Uniprot ID | Q9K2J6 |
Locus tag | A6J62_RS04510 | Protein ID | WP_000246253.1 |
Coordinates | 858197..858469 (+) | Length | 91 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
A6J62_RS04450 | 853694..853936 | - | 243 | WP_000107461.1 | hypothetical protein | - |
A6J62_RS04455 | 854028..854177 | - | 150 | WP_071908333.1 | DUF3265 domain-containing protein | - |
A6J62_RS04460 | 854150..854401 | - | 252 | WP_001890111.1 | TIGR03643 family protein | - |
A6J62_RS04465 | 854596..854982 | - | 387 | WP_000703163.1 | VOC family protein | - |
A6J62_RS04470 | 854972..855073 | - | 102 | WP_001921603.1 | hypothetical protein | - |
A6J62_RS19590 | 855273..855479 | - | 207 | Protein_821 | DUF3709 domain-containing protein | - |
A6J62_RS04475 | 855731..856009 | - | 279 | WP_001921601.1 | DUF3709 domain-containing protein | - |
A6J62_RS04485 | 856295..856573 | + | 279 | WP_001258569.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
A6J62_RS04490 | 856566..856835 | + | 270 | WP_000277238.1 | type II toxin-antitoxin system YafQ family toxin | - |
A6J62_RS04495 | 856983..857429 | - | 447 | WP_000006157.1 | hypothetical protein | - |
A6J62_RS19595 | 857625..857663 | - | 39 | WP_106019118.1 | hypothetical protein | - |
A6J62_RS04505 | 857679..857804 | - | 126 | WP_001900195.1 | DUF645 family protein | - |
A6J62_RS04510 | 858197..858469 | + | 273 | WP_000246253.1 | DUF1778 domain-containing protein | Antitoxin |
A6J62_RS04515 | 858466..858963 | + | 498 | WP_000982260.1 | GNAT family N-acetyltransferase | Toxin |
A6J62_RS04520 | 859113..859628 | - | 516 | WP_001201509.1 | lipocalin family protein | - |
A6J62_RS04525 | 859765..860301 | - | 537 | WP_000469482.1 | GNAT family N-acetyltransferase | - |
A6J62_RS04540 | 860559..860840 | - | 282 | WP_001894429.1 | DUF1289 domain-containing protein | - |
A6J62_RS04545 | 860789..860902 | - | 114 | WP_001900214.1 | hypothetical protein | - |
A6J62_RS04550 | 860959..861345 | - | 387 | WP_001015867.1 | NUDIX hydrolase | - |
A6J62_RS04555 | 861589..861831 | + | 243 | WP_000557292.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
A6J62_RS04560 | 861850..862167 | + | 318 | WP_001180243.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
A6J62_RS04570 | 862321..862659 | - | 339 | WP_000713853.1 | hypothetical protein | - |
A6J62_RS04575 | 862817..863521 | - | 705 | WP_000087610.1 | HNH endonuclease | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Genomic island | catB9 | - | 749087..881909 | 132822 | |
inside | Integron | - | - | 749463..875103 | 125640 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 166 a.a. Molecular weight: 18527.18 Da Isoelectric Point: 8.7753
>T74630 WP_000982260.1 NZ_CP020407:858466-858963 [Vibrio cholerae]
MMNTVLLDKDKHDRNRFNCGTEALNNYLKVMASQQAKKDNTRTFVLEDDNNSAYIIGFYTLTMTPIDLKALPDKLQKKHQ
SSTSGGLIARLAVDDRYKGKGFGEWLLIDALRKLLAASDSVAFPVVIVDAKDGAKHFYERYGFQAFQDAENKLFITIADI
RASLG
MMNTVLLDKDKHDRNRFNCGTEALNNYLKVMASQQAKKDNTRTFVLEDDNNSAYIIGFYTLTMTPIDLKALPDKLQKKHQ
SSTSGGLIARLAVDDRYKGKGFGEWLLIDALRKLLAASDSVAFPVVIVDAKDGAKHFYERYGFQAFQDAENKLFITIADI
RASLG
Download Length: 498 bp
>T74630 NZ_CP020407:858466-858963 [Vibrio cholerae]
ATGATGAATACGGTACTTCTCGATAAAGATAAGCACGATAGGAACCGTTTCAATTGTGGCACTGAAGCACTCAACAATTA
CTTAAAAGTAATGGCGAGTCAGCAAGCCAAAAAAGACAACACCAGAACCTTCGTTTTGGAAGATGACAATAACAGTGCTT
ATATCATCGGCTTTTACACTCTGACTATGACGCCCATTGATTTGAAAGCCTTGCCCGACAAGTTACAAAAGAAGCACCAA
TCCTCAACCTCTGGAGGGCTCATTGCTCGTTTAGCTGTCGACGATAGATACAAAGGAAAAGGTTTTGGTGAGTGGCTACT
CATTGACGCTCTCAGAAAGCTACTCGCAGCCAGTGACAGTGTAGCGTTCCCTGTTGTCATTGTTGATGCCAAAGATGGTG
CAAAACATTTCTATGAGCGCTATGGGTTTCAAGCGTTTCAAGATGCCGAAAACAAACTCTTCATCACCATTGCTGATATC
AGAGCAAGCTTAGGCTAG
ATGATGAATACGGTACTTCTCGATAAAGATAAGCACGATAGGAACCGTTTCAATTGTGGCACTGAAGCACTCAACAATTA
CTTAAAAGTAATGGCGAGTCAGCAAGCCAAAAAAGACAACACCAGAACCTTCGTTTTGGAAGATGACAATAACAGTGCTT
ATATCATCGGCTTTTACACTCTGACTATGACGCCCATTGATTTGAAAGCCTTGCCCGACAAGTTACAAAAGAAGCACCAA
TCCTCAACCTCTGGAGGGCTCATTGCTCGTTTAGCTGTCGACGATAGATACAAAGGAAAAGGTTTTGGTGAGTGGCTACT
CATTGACGCTCTCAGAAAGCTACTCGCAGCCAGTGACAGTGTAGCGTTCCCTGTTGTCATTGTTGATGCCAAAGATGGTG
CAAAACATTTCTATGAGCGCTATGGGTTTCAAGCGTTTCAAGATGCCGAAAACAAACTCTTCATCACCATTGCTGATATC
AGAGCAAGCTTAGGCTAG
Antitoxin
Download Length: 91 a.a. Molecular weight: 9683.22 Da Isoelectric Point: 6.2988
>AT74630 WP_000246253.1 NZ_CP020407:858197-858469 [Vibrio cholerae]
MATTLPRITARVDVDTQDLLAKAAALAGMSSINSFVLNAAIEKAKQVIEREQALKLSQADAVLLMEALDNPAVVNAKLKL
ASERYESKTQ
MATTLPRITARVDVDTQDLLAKAAALAGMSSINSFVLNAAIEKAKQVIEREQALKLSQADAVLLMEALDNPAVVNAKLKL
ASERYESKTQ
Download Length: 273 bp
>AT74630 NZ_CP020407:858197-858469 [Vibrio cholerae]
ATGGCAACGACTTTGCCTCGCATCACCGCTAGAGTTGATGTCGATACTCAAGATTTACTCGCTAAGGCTGCTGCTCTTGC
TGGTATGTCTAGTATTAACTCATTTGTTTTGAATGCAGCAATCGAAAAAGCAAAACAAGTCATTGAACGTGAGCAAGCTC
TAAAGCTTAGCCAAGCTGATGCCGTATTGCTGATGGAAGCTCTTGATAATCCAGCTGTAGTAAATGCAAAGCTCAAATTG
GCATCCGAACGTTATGAGAGCAAAACTCAATGA
ATGGCAACGACTTTGCCTCGCATCACCGCTAGAGTTGATGTCGATACTCAAGATTTACTCGCTAAGGCTGCTGCTCTTGC
TGGTATGTCTAGTATTAACTCATTTGTTTTGAATGCAGCAATCGAAAAAGCAAAACAAGTCATTGAACGTGAGCAAGCTC
TAAAGCTTAGCCAAGCTGATGCCGTATTGCTGATGGAAGCTCTTGATAATCCAGCTGTAGTAAATGCAAAGCTCAAATTG
GCATCCGAACGTTATGAGAGCAAAACTCAATGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0Q0KGB1 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0F2IC79 |