58311

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/ParE-RHH
Location 513990..514528 Replicon chromosome
Accession NZ_CP013310
Organism Vibrio cholerae strain E1162

Toxin (Protein)


Gene name parE Uniprot ID Q9KMJ0
Locus tag ASZ87_RS17015 Protein ID WP_000802136.1
Coordinates 513990..514289 (-) Length 100 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID P58093
Locus tag ASZ87_RS17020 Protein ID WP_001107719.1
Coordinates 514286..514528 (-) Length 81 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
ASZ87_RS16965 509925..510107 + 183 WP_000923182.1 DUF645 family protein -
ASZ87_RS16970 510307..510780 + 474 WP_001161076.1 GrpB family protein -
ASZ87_RS16975 510795..510887 + 93 WP_014378730.1 DUF3265 domain-containing protein -
ASZ87_RS16980 510929..511555 + 627 WP_000365424.1 LysE family translocator -
ASZ87_RS16985 511678..512376 + 699 WP_001890502.1 hypothetical protein -
ASZ87_RS16990 512386..512496 + 111 WP_079857360.1 DUF3265 domain-containing protein -
ASZ87_RS17005 513074..513253 + 180 WP_001883058.1 DUF645 family protein -
ASZ87_RS17010 513467..513862 + 396 WP_000870857.1 DUF3465 domain-containing protein -
ASZ87_RS17015 513990..514289 - 300 WP_000802136.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
ASZ87_RS17020 514286..514528 - 243 WP_001107719.1 type II toxin-antitoxin system ParD family antitoxin Antitoxin
ASZ87_RS17025 514757..515335 + 579 WP_000110120.1 hypothetical protein -
ASZ87_RS17030 515357..515449 + 93 WP_014164112.1 DUF3265 domain-containing protein -
ASZ87_RS17040 515873..516556 + 684 WP_000877436.1 hypothetical protein -
ASZ87_RS17045 516770..517036 + 267 WP_000937852.1 hypothetical protein -
ASZ87_RS17050 517191..517790 + 600 WP_000429495.1 hypothetical protein -
ASZ87_RS17055 518071..519006 + 936 WP_000051985.1 restriction endonuclease -
ASZ87_RS17060 518972..519112 + 141 WP_001883049.1 DUF3265 domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island catB9 - 435534..596659 161125
inside Integron - - 440614..596283 155669


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(6-92)

Antitoxin

Antitoxin ParD

(1-79)


Sequences

Toxin        


Download         Length: 100 a.a.        Molecular weight: 11589.29 Da        Isoelectric Point: 9.9232

>T58311 WP_000802136.1 NZ_CP013310:c514289-513990 [Vibrio cholerae]
MKPFNLTVAAKADLRDIALFTQRRWGKEQRNVYLKQFDDSFWLLAENPDIGKSCDEIREGYRKFPQGSHVIFYQQTGSQQ
IRVIRILHKSMDVNPIFGA

Download         Length: 300 bp

>T58311 NZ_CP013310:c514289-513990 [Vibrio cholerae]
ATGAAACCATTTAATCTTACCGTCGCCGCCAAAGCCGATTTACGTGATATTGCTTTATTCACTCAACGACGCTGGGGAAA
AGAGCAGCGAAATGTTTATTTAAAGCAATTCGATGATTCCTTTTGGCTTTTAGCGGAAAATCCCGACATTGGTAAATCAT
GCGATGAAATCCGAGAGGGATACAGAAAATTTCCCCAAGGGAGTCACGTCATCTTTTATCAGCAAACCGGCAGCCAACAA
ATCAGGGTGATCCGAATTCTTCATAAGAGCATGGATGTGAACCCAATATTCGGCGCATAA

Antitoxin


Download         Length: 81 a.a.        Molecular weight: 8964.84 Da        Isoelectric Point: 4.1677

>AT58311 WP_001107719.1 NZ_CP013310:c514528-514286 [Vibrio cholerae]
MAKNTSITLGEHFDGFITSQIQSGRYGSASEVIRSALRLLENQETKLQSLRQLLIEGEQSGDADYDLDSFINELDSENIR

Download         Length: 243 bp

>AT58311 NZ_CP013310:c514528-514286 [Vibrio cholerae]
ATGGCTAAAAATACAAGTATCACTCTTGGTGAACACTTCGATGGCTTTATTACAAGCCAAATACAAAGTGGGCGTTACGG
CTCAGCAAGTGAAGTCATTCGCTCTGCGCTACGTCTACTCGAAAACCAAGAAACCAAACTACAGTCACTCCGTCAACTAC
TTATTGAAGGAGAGCAAAGTGGTGACGCTGATTATGACCTTGATAGCTTCATCAATGAACTCGATAGTGAAAACATTCGA
TGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 7R5A

Antitoxin

Source ID Structure
AlphaFold DB A0A151JFU4

References