58218

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/ParE-Phd
Location 356206..356784 Replicon chromosome
Accession NZ_CP013302
Organism Vibrio cholerae strain C5

Toxin (Protein)


Gene name parE Uniprot ID O68848
Locus tag ASZ80_RS16000 Protein ID WP_001180243.1
Coordinates 356206..356523 (-) Length 106 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID Q7DCR7
Locus tag ASZ80_RS16005 Protein ID WP_000557292.1
Coordinates 356542..356784 (-) Length 81 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
ASZ80_RS15970 351730..351912 + 183 WP_000923340.1 DUF645 family protein -
ASZ80_RS15975 352266..352448 + 183 WP_000923153.1 DUF645 family protein -
ASZ80_RS15980 352643..353320 + 678 WP_000254617.1 HNH endonuclease -
ASZ80_RS15985 353482..354690 + 1209 WP_000272282.1 deoxyguanosinetriphosphate triphosphohydrolase family protein -
ASZ80_RS15990 354852..355556 + 705 WP_000087610.1 HNH endonuclease -
ASZ80_RS15995 355714..356052 + 339 WP_000713853.1 hypothetical protein -
ASZ80_RS16000 356206..356523 - 318 WP_001180243.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
ASZ80_RS16005 356542..356784 - 243 WP_000557292.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
ASZ80_RS16010 357028..357414 + 387 WP_001015867.1 NUDIX hydrolase -
ASZ80_RS16015 357471..357584 + 114 WP_001900214.1 hypothetical protein -
ASZ80_RS16020 357533..357814 + 282 WP_001894429.1 DUF1289 domain-containing protein -
ASZ80_RS16030 358072..358608 + 537 WP_000469482.1 GNAT family N-acetyltransferase -
ASZ80_RS16035 358745..359260 + 516 WP_001201509.1 lipocalin family protein -
ASZ80_RS16040 359410..359907 - 498 WP_000982260.1 GNAT family N-acetyltransferase -
ASZ80_RS16045 359904..360176 - 273 WP_000246253.1 DUF1778 domain-containing protein -
ASZ80_RS20495 360569..360694 + 126 WP_001900195.1 DUF645 family protein -
ASZ80_RS20500 360710..360748 + 39 WP_106019118.1 hypothetical protein -
ASZ80_RS16055 360944..361390 + 447 WP_000006157.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island catB9 - 304694..469286 164592
inside Integron - - 309774..468910 159136


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(6-93)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-71)


Sequences

Toxin        


Download         Length: 106 a.a.        Molecular weight: 12158.97 Da        Isoelectric Point: 9.7495

>T58218 WP_001180243.1 NZ_CP013302:c356523-356206 [Vibrio cholerae]
MQNKQYKLSQLAQEHLLKIKHYTIENFAEAQWQKYKSTLLSGFQTLADNPGLGKSCEDIYQNGFYFPVGKHMAYYTKEAN
FILIVAVLGQSQLPQKHLKQSRFVS

Download         Length: 318 bp

>T58218 NZ_CP013302:c356523-356206 [Vibrio cholerae]
ATGCAAAATAAACAATATAAGCTCAGCCAATTAGCCCAAGAGCACTTACTCAAGATTAAACACTACACCATTGAAAATTT
CGCTGAAGCGCAGTGGCAAAAATATAAGTCGACCTTGCTTTCAGGTTTCCAAACTCTTGCGGATAACCCAGGACTAGGAA
AAAGCTGTGAAGATATTTACCAAAATGGTTTTTACTTTCCAGTGGGGAAACACATGGCTTATTACACCAAAGAAGCAAAC
TTCATTCTCATTGTTGCGGTATTAGGGCAATCACAACTGCCCCAAAAGCATCTCAAACAGTCACGCTTTGTTTCTTAG

Antitoxin


Download         Length: 81 a.a.        Molecular weight: 8961.25 Da        Isoelectric Point: 5.6630

>AT58218 WP_000557292.1 NZ_CP013302:c356784-356542 [Vibrio cholerae]
MHTLTANDAKRNFGELLLSAQREPVIISKNSKNTVVVMSIKDFEELEAMKLDYLKHCFESAQKDLDSGKTVDGATFLNTL

Download         Length: 243 bp

>AT58218 NZ_CP013302:c356784-356542 [Vibrio cholerae]
ATGCACACACTAACAGCAAATGATGCTAAACGAAATTTTGGTGAACTTCTTCTAAGCGCACAACGCGAACCTGTCATCAT
CAGCAAAAACAGTAAGAATACTGTCGTTGTCATGTCCATTAAGGACTTTGAAGAACTTGAAGCAATGAAACTCGATTATC
TCAAACACTGCTTTGAGTCTGCTCAGAAAGACTTAGATAGTGGCAAAACCGTTGATGGTGCCACTTTTCTAAACACCCTT
TGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0K9UJR8

Antitoxin

Source ID Structure
AlphaFold DB Q7DCR7

References