198980

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/YafQ-RelB
Location 328886..329426 Replicon chromosome
Accession NZ_CP072848
Organism Vibrio cholerae strain A1552

Toxin (Protein)


Gene name relE Uniprot ID A0A151JGK8
Locus tag J9265_RS15215 Protein ID WP_000277238.1
Coordinates 328886..329155 (-) Length 90 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID Q9KML3
Locus tag J9265_RS15220 Protein ID WP_001258569.1
Coordinates 329148..329426 (-) Length 93 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
J9265_RS15160 (J9265_15160) 323890..324132 - 243 WP_000557292.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
J9265_RS15165 (J9265_15165) 324376..324762 + 387 WP_001015867.1 NUDIX hydrolase -
J9265_RS15170 (J9265_15170) 324819..324932 + 114 WP_001900214.1 hypothetical protein -
J9265_RS15175 (J9265_15175) 324941..325162 + 222 WP_032467793.1 DUF1289 domain-containing protein -
J9265_RS15180 (J9265_15180) 325420..325956 + 537 WP_000469482.1 GNAT family protein -
J9265_RS15185 (J9265_15185) 326147..326608 + 462 WP_001903091.1 lipocalin family protein -
J9265_RS19000 326673..326741 + 69 Protein_286 acetyltransferase -
J9265_RS15190 (J9265_15190) 326758..327255 - 498 WP_000982260.1 GNAT family N-acetyltransferase -
J9265_RS15195 (J9265_15195) 327252..327524 - 273 WP_000246253.1 DUF1778 domain-containing protein -
J9265_RS15200 (J9265_15200) 327917..328042 + 126 WP_001900195.1 DUF645 family protein -
J9265_RS15210 (J9265_15210) 328292..328738 + 447 WP_000006157.1 hypothetical protein -
J9265_RS15215 (J9265_15215) 328886..329155 - 270 WP_000277238.1 type II toxin-antitoxin system YafQ family toxin Toxin
J9265_RS15220 (J9265_15220) 329148..329426 - 279 WP_001258569.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
J9265_RS19005 329477..329594 + 118 Protein_293 DUF3265 domain-containing protein -
J9265_RS15225 (J9265_15225) 329712..329990 + 279 WP_001921601.1 DUF3709 domain-containing protein -
J9265_RS19010 330350..330448 + 99 WP_223225486.1 DUF3709 domain-containing protein -
J9265_RS15235 (J9265_15235) 330648..330749 + 102 WP_001921603.1 hypothetical protein -
J9265_RS15240 (J9265_15240) 330739..331125 + 387 WP_000703163.1 VOC family protein -
J9265_RS15245 (J9265_15245) 331320..331571 + 252 WP_001890111.1 TIGR03643 family protein -
J9265_RS15250 (J9265_15250) 331544..331693 + 150 WP_071908333.1 DUF3265 domain-containing protein -
J9265_RS15255 (J9265_15255) 331785..332027 + 243 WP_000107461.1 hypothetical protein -
J9265_RS15260 (J9265_15260) 332279..332557 + 279 WP_000280324.1 DUF3709 domain-containing protein -
J9265_RS19015 332989..333032 + 44 Protein_302 hypothetical protein -
J9265_RS19020 333014..333107 + 94 Protein_303 ggdef family protein -
J9265_RS19025 333076..333207 + 132 WP_001883067.1 hypothetical protein -
J9265_RS15275 (J9265_15275) 333379..333846 + 468 WP_001289288.1 OsmC family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island catB9 - 306914..436175 129261
inside Integron - - 311994..435799 123805


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, YafQ-like toxin

(2-89)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(1-85)


Sequences

Toxin        


Download         Length: 90 a.a.        Molecular weight: 10406.11 Da        Isoelectric Point: 9.5084

>T198980 WP_000277238.1 NZ_CP072848:c329155-328886 [Vibrio cholerae]
MYKLEYSTQFKKDFKKITKMPISDIIEVGNVISKLQRGEKLEPKNVDHPLTGNWVGFRDCHIKPDLVLIYRVFNDQLQLA
RIGSHSDLF

Download         Length: 270 bp

>T198980 NZ_CP072848:c329155-328886 [Vibrio cholerae]
ATGTATAAACTCGAATACTCCACACAGTTTAAGAAAGATTTCAAAAAGATAACTAAGATGCCGATTTCAGACATCATTGA
AGTCGGCAATGTTATTTCTAAGCTGCAACGCGGCGAAAAGCTTGAACCCAAGAATGTTGACCATCCGTTAACTGGAAATT
GGGTTGGATTTCGAGACTGCCACATTAAACCCGACCTAGTGTTAATCTATCGAGTTTTTAACGATCAACTACAACTAGCG
CGCATTGGTTCACATAGTGATTTATTCTAA

Antitoxin


Download         Length: 93 a.a.        Molecular weight: 10088.58 Da        Isoelectric Point: 6.0728

>AT198980 WP_001258569.1 NZ_CP072848:c329426-329148 [Vibrio cholerae]
MRTEMLSTRIDHDTKIAFTNVCDEMGLSTSQAIKLFAKAVINHGGIPFELRVPQPNEVTASAIQELVEGKGHKAESVEAM
LNELTEGKVKHV

Download         Length: 279 bp

>AT198980 NZ_CP072848:c329426-329148 [Vibrio cholerae]
ATGAGAACAGAAATGCTGAGCACGCGCATTGACCACGACACGAAAATTGCGTTCACAAACGTCTGCGATGAGATGGGTCT
AAGTACATCACAGGCCATAAAGTTATTTGCAAAAGCGGTTATTAATCATGGTGGAATCCCTTTTGAGCTGCGAGTTCCAC
AGCCTAATGAGGTTACTGCATCTGCAATTCAAGAGCTCGTTGAAGGAAAAGGACATAAAGCTGAATCCGTTGAAGCTATG
CTGAATGAGCTTACTGAAGGCAAAGTTAAGCATGTATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A151JGK8

Antitoxin

Source ID Structure
AlphaFold DB A0A151KTP9

References