104339

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE-RelB
Location 343652..344211 Replicon chromosome
Accession NZ_CP028895
Organism Vibrio cholerae strain A1552

Toxin (Protein)


Gene name relE Uniprot ID Q9K2M8
Locus tag A1552VC_RS15970 Protein ID WP_000578476.1
Coordinates 343652..343930 (-) Length 93 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID Q9L991
Locus tag A1552VC_RS15975 Protein ID WP_000381183.1
Coordinates 343927..344211 (-) Length 95 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
A1552VC_RS15915 338689..338922 + 234 WP_001890112.1 DUF3709 domain-containing protein -
A1552VC_RS15920 339190..339696 + 507 WP_000393074.1 hypothetical protein -
A1552VC_RS15925 339853..340239 + 387 WP_000703163.1 VOC family protein -
A1552VC_RS15930 340434..340685 + 252 WP_001890111.1 TIGR03643 family protein -
A1552VC_RS15935 340658..340807 + 150 WP_071908333.1 DUF3265 domain-containing protein -
A1552VC_RS15940 340954..341379 + 426 WP_000415750.1 hypothetical protein -
A1552VC_RS15945 341585..342208 + 624 WP_000247070.1 DUF1349 domain-containing protein -
A1552VC_RS15950 342421..342900 + 480 WP_000009888.1 lecithin retinol acyltransferase family protein -
A1552VC_RS15960 343088..343501 + 414 WP_000049420.1 VOC family protein -
A1552VC_RS15970 343652..343930 - 279 WP_000578476.1 type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family Toxin
A1552VC_RS15975 343927..344211 - 285 WP_000381183.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
A1552VC_RS15980 344406..344921 + 516 WP_001201520.1 lipocalin family protein -
A1552VC_RS15985 344986..345582 + 597 WP_000255434.1 hypothetical protein -
A1552VC_RS15995 345974..346156 + 183 WP_000923182.1 DUF645 family protein -
A1552VC_RS16000 346356..346829 + 474 WP_001161076.1 GrpB family protein -
A1552VC_RS16005 346844..346936 + 93 WP_014378730.1 DUF3265 domain-containing protein -
A1552VC_RS16010 346978..347604 + 627 WP_000365424.1 LysE family translocator -
A1552VC_RS16015 347727..348425 + 699 WP_001890502.1 hypothetical protein -
A1552VC_RS16020 348435..348545 + 111 WP_079857360.1 DUF3265 domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island catB9 - 306914..436175 129261
inside Integron - - 311994..435799 123805


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(2-89)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(5-70)


Sequences

Toxin        


Download         Length: 93 a.a.        Molecular weight: 10819.59 Da        Isoelectric Point: 5.1651

>T104339 WP_000578476.1 NZ_CP028895:c343930-343652 [Vibrio cholerae]
MIFWEEASLNDREKIFEFLYDFNPAAAKKTDELIEAKVENLLEQPLIGVQRDGIRGRLLIIPEISMIVSYWVDGSKIRIM
RVLHQKQKFPND

Download         Length: 279 bp

>T104339 NZ_CP028895:c343930-343652 [Vibrio cholerae]
ATGATTTTCTGGGAAGAAGCATCTCTCAATGATCGTGAGAAAATTTTCGAATTTCTCTACGACTTTAACCCAGCAGCGGC
TAAAAAAACGGATGAGCTCATAGAAGCCAAAGTCGAAAATTTGCTTGAGCAACCACTAATCGGTGTTCAGCGTGATGGCA
TTAGAGGCAGATTGCTTATTATCCCTGAGATATCAATGATTGTTTCGTATTGGGTTGATGGTTCTAAAATTCGAATAATG
CGTGTACTACATCAGAAACAAAAATTTCCAAACGACTGA

Antitoxin


Download         Length: 95 a.a.        Molecular weight: 10901.25 Da        Isoelectric Point: 8.0775

>AT104339 WP_000381183.1 NZ_CP028895:c344211-343927 [Vibrio cholerae]
MDTRIQFRVDEETKRLAQQMAESQGRTLSDACRELTEQLAEQQRKALSHDAWLTEQVNQAFEKFDSGKAVFIEHDIAKAR
MAERKAKIRNRGHA

Download         Length: 285 bp

>AT104339 NZ_CP028895:c344211-343927 [Vibrio cholerae]
ATGGATACTAGAATTCAATTTCGTGTAGACGAAGAAACAAAACGTTTAGCTCAACAAATGGCTGAAAGCCAAGGTCGAAC
TCTTAGCGATGCTTGCCGTGAACTCACTGAACAATTAGCTGAGCAGCAACGCAAGGCATTATCTCACGATGCATGGCTAA
CTGAACAAGTGAATCAAGCATTTGAGAAGTTCGACTCAGGAAAAGCAGTATTCATTGAACATGACATCGCCAAAGCACGA
ATGGCTGAACGTAAAGCTAAAATCCGAAATCGAGGCCACGCATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB Q9K2M8

Antitoxin

Source ID Structure
AlphaFold DB A0A067BL33

References